update prokka installation in docker image

- need to set 'yes' by default to install libxml-simple-perl library (RUN DEBIAN_FRONTEND="noninteractive" apt install)
- need to install bioperl from cpan (RUN echo yes | cpan Bio::Perl)

for_build/annote_and_1tree/Dockerfile

@@ -30,6 +30,7 @@ RUN DEBIAN_FRONTEND="noninteractive" apt install -y\
         git \
         default-jre \
         bioperl
+RUN echo yes | cpan Bio::Perl
 RUN git clone https://github.com/tseemann/prokka.git
 RUN /install_dir/prokka/bin/prokka --setupdb &&\
     ln -s /install_dir/prokka/bin/prokka /usr/local/bin

for_build/mafft/Dockerfile

@@ -16,7 +16,7 @@ RUN apt-get install -y \
 RUN pip3 install --upgrade pip
 
 # Install packages to install mafft
-RUN apt-get install -y \
+RUN DEBIAN_FRONTEND="noninteractive" apt-get install -y \
         libdatetime-perl                 \
         libxml-simple-perl \
         libdigest-md5-perl \

for_tests/Dockerfile

@@ -62,6 +62,7 @@ RUN DEBIAN_FRONTEND="noninteractive" apt install -y\
         git \
         default-jre \
         bioperl
+RUN echo yes | cpan Bio::Perl
 RUN git clone https://github.com/tseemann/prokka.git
 RUN /install_dir/prokka/bin/prokka --setupdb &&\
     ln -s /install_dir/prokka/bin/prokka /usr/local/bin