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Commit 44675a1d authored by Amandine  PERRIN's avatar Amandine PERRIN
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Update installation of mmseqs

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...@@ -18,7 +18,7 @@ WORKDIR /tmp ...@@ -18,7 +18,7 @@ WORKDIR /tmp
RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\ RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
tar -xf 0.8.tar.gz &&\ tar -xf 0.8.tar.gz &&\
rm 0.8.tar.gz rm 0.8.tar.gz
RUN ln -s /tmp/barrnap-0.8/bin/barrnap /usr/local/bin RUN mv /tmp/barrnap-0.8/bin/barrnap /usr/local/bin
# Remove heavy useless files # Remove heavy useless files
RUN rm -r /tmp/barrnap-0.8/examples /tmp/barrnap-0.8/build/*.aln RUN rm -r /tmp/barrnap-0.8/examples /tmp/barrnap-0.8/build/*.aln
...@@ -33,14 +33,16 @@ RUN apt-get install -y\ ...@@ -33,14 +33,16 @@ RUN apt-get install -y\
bioperl bioperl
RUN git clone https://github.com/tseemann/prokka.git RUN git clone https://github.com/tseemann/prokka.git
RUN /tmp/prokka/bin/prokka --setupdb RUN /tmp/prokka/bin/prokka --setupdb
RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin RUN mv /tmp/prokka/bin/prokka /usr/local/bin
RUN rm -r /tmp/prokka
# Install mmseqs2 # Install mmseqs2
WORKDIR /tmp WORKDIR /tmp
RUN git clone https://github.com/soedinglab/MMseqs2.git RUN wget https://mmseqs.com/latest/mmseqs-static_sse41.tar.gz &&\
WORKDIR /tmp/MMseqs2 tar xf mmseqs-static_sse41.tar.gz &&\
RUN mkdir build rm mmseqs-static_sse41.tar.gz
WORKDIR /tmp/MMseqs2/build RUN mv /tmp/mmseqs2/bin/mmseqs /usr/local/bin
RUN cmake -DCMAKE_BUILD_TYPE=RELEASE -DCMAKE_INSTALL_PREFIX=. .. # remove useless files
RUN make && make install RUN rm -r /tmp/mmseqs2
RUN ln -s /tmp/MMseqs2/build/bin/mmseqs /usr/local/bin
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