Move most config to setup.cfg instead of pyproject.toml

pyproject.toml

 [build-system]
 requires = ["setuptools"]
 build-backend = "setuptools.build_meta"
-
-[project]
-name = "PanACoTA"
-authors = [
-    {name = "Amandine PERRIN", email = "amandine.perrin@pasteur.fr"},
-]
-description="Large scale comparative genomics tools: annotate genomes, do pangenome, core/persistent genome, align core/persistent families, infer phylogenetic tree."
-requires-python = ">=3.7"
-keywords = ["persistent genome", "pangenome", "bacteria", "Bioinformatics", "Comparative genomics",
-            "core genome", "phylogenetic tree", "alignment", "families"]
-license = {text = "aGPL v3"}
-classifiers = [
-    "Environment :: Console",
-    "Intended Audience :: Science/Research",
-    "License :: OSI Approved :: GNU Affero General Public License v3",
-    "Programming Language :: Python :: 3",
-    "Operating System :: OS Independent",
-    "Topic :: Scientific/Engineering :: Bio-Informatics",
-]
-dynamic = ["version", "readme", "dependencies", "optional-dependencies"]
-
-[tool.setuptools.dynamic]
-version = {attr = "PanACoTA.__init__.__version__"}
-readme = {file = ["README.md"]}
-dependencies = {file = ["requirements.txt"]}
-optional-dependencies = {dev = {file = ["requirements-dev.txt"]}}
-
-[project.scripts]
-PanACoTA = "PanACoTA.bin.run_panacota:main"
-
-[tool.setuptools]
-packages = ["PanACoTA"]
-
-[project.urls]
-homepage = "https://github.com/gem-pasteur/PanACoTA"
-documentation = "https://aperrin.pages.pasteur.fr/pipeline_annotation/html-doc/"

setup.cfg

+[metadata]
+version= attr: PanACoTA.__init__.__version__
+name = PanACoTA
+author = Amandine PERRIN
+author_email = amandine.perrin@pasteur.fr
+description = Large scale comparative genomics tools: annotate genomes, do pangenome, core/persistent genome, align core/persistent families, infer phylogenetic tree.
+long_description = file: README.md
+long_description_content_type = text/markdown
+home_page = https://github.com/gem-pasteur/PanACoTA
+project_urls =
+    Documentation = https://aperrin.pages.pasteur.fr/pipeline_annotation/html-doc/
+license = aGPLv3
+license_files = COPYING
+classifiers =
+    Programming Language :: Python :: 3
+    License :: OSI Approved :: GNU Affero General Public License v3 (aGPL v3)
+    Operating System :: OS Independent
+    Environment :: Console
+    Intended Audience :: Science/Research
+    Topic :: Scientific/Engineering :: Bio-Informatics
+
+[options]
+requires-python = ">=3.10"
+install_requires = 
+    termcolor
+    colorlog
+    progressbar2
+    ncbi_genome_download >= 0.3.3
+    numpy>=1.11
+    scipy
+    matplotlib>=2.0.0
+    biopython>=1.60  # only used for tree subcommand with fastme and quicktree... Comment this line if you do not want to use it
+packages = find:
+
+[options.packages.find]
+exclude =
+	build
+	tests
+
+[options.extras_require]
+dev =
+    sphinx
+    sphinx_rtd_theme
+    numpydoc
+    pytest>=2.5.2
+    pytest-cov>=1.6
+    pytest-mpl>=0.8
+    coverage>=4
+
+[options.entry_points]
+console_scripts =
+    PanACoTA=PanACoTA.bin.run_panacota:main
+
 [test]
 local_freetype = True
 tests = True