Merge branch 'master' into functional_tests

README.md

-# **-- PanACoTA --**
- [![License (AGPL version 3)](https://img.shields.io/badge/license-GNU%20AGPL%20version%203-blue.svg?style=flat-square)](COPYING)
+# **PanACoTA**
+ [![License (AGPL version 3)](https://img.shields.io/badge/license-GNU%20AGPL%20version%203-blue.svg)](COPYING)
 [![https://www.singularity-hub.org/static/img/hosted-singularity--hub-%23e32929.svg](https://www.singularity-hub.org/static/img/hosted-singularity--hub-%23e32929.svg)](https://singularity-hub.org/collections/4724)
 
-
-[![pipeline status](https://gitlab.pasteur.fr/aperrin/pipeline_annotation/badges/master/pipeline.svg?style=flat)](https://gitlab.pasteur.fr/aperrin/pipeline_annotation/-/pipelines)
+[![pipeline status](https://gitlab.pasteur.fr/aperrin/pipeline_annotation/badges/master/pipeline.svg)](https://gitlab.pasteur.fr/aperrin/pipeline_annotation/-/pipelines)
 <!---
-[![coverage report](https://gitlab.pasteur.fr/aperrin/pipeline_annotation/badges/master/coverage.svg)](http://aperrin.pages.pasteur.fr/pipeline_annotation/htmlcov) 
--->   
+[![coverage report](https://gitlab.pasteur.fr/aperrin/pipeline_annotation/badges/master/coverage.svg)](http://aperrin.pages.pasteur.fr/pipeline_annotation/htmlcov)
+
+To get right angles instead of rounded ones, 
+add '?style=flat-square' after .svg
+-->
+
 This README file provides some essential information to install/use PanACoTA. But it is better to read the [**full documentation**](http://aperrin.pages.pasteur.fr/pipeline_annotation/html-doc), providing more details : [![](doc/source/images/manual.jpg) ](http://aperrin.pages.pasteur.fr/pipeline_annotation/html-doc)
 
 ---