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Commit 7395bf7f authored by Amandine PERRIN's avatar Amandine PERRIN
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remove dependences with make

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...@@ -26,8 +26,7 @@ PanACoTA is a software providing tools for large scale comparative genomics: ...@@ -26,8 +26,7 @@ PanACoTA is a software providing tools for large scale comparative genomics:
PanACoTA is written in **python3**. So, you need python3 (and pip3 for installation) to run it. PanACoTA is written in **python3**. So, you need python3 (and pip3 for installation) to run it.
Its external dependencies are: Its external dependencies are:
- [**prokka**](https://github.com/tseemann/prokka) (to annotate the genomes). If you do not already have it, this software will be automatically installed by `make` script, along with `PanACoTA` (see [Install section](#install) - [**prokka**](https://github.com/tseemann/prokka) (to annotate the genomes)
)
- [**mmseqs**](https://github.com/soedinglab/MMseqs2) (to generate pangenomes) - [**mmseqs**](https://github.com/soedinglab/MMseqs2) (to generate pangenomes)
- [**mafft**](http://mafft.cbrc.jp/alignment/software/) (to align persistent genome) - [**mafft**](http://mafft.cbrc.jp/alignment/software/) (to align persistent genome)
- At least one of those softwares, to infer a phylogenetic tree: - At least one of those softwares, to infer a phylogenetic tree:
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