Write contig name as i005 instead of 005i

PanACoTA/annotate_module/general_format_functions.py

@@ -165,7 +165,6 @@ def handle_genome(args):
         format_one_genome = fprodigal.format_one_genome
     else:
         format_one_genome = fprokka.format_one_genome
-
     # Set logger for this process
     qh = logging.handlers.QueueHandler(q)
     root = logging.getLogger()
@@ -234,7 +233,7 @@ def write_gene(gtype, locus_num, gene_name, product, crispr_num, cont_loc,
         gene_name = "crispr"
         product = "crispr-array"
         crispr_num += 1
-    locus_name = "{}.{}{}_{}".format(genome, str(cont_num).zfill(4), cont_loc,
+    locus_name = "{}.{}{}_{}".format(genome, cont_loc, str(cont_num).zfill(4),
                                      str(locus_num).zfill(5))
     # If '|' character found in those fields, replace by '_' to avoid problems while parsing
     more_info = "| {} | {} | {} | {}".format(product.replace("|", "_"),

test/data/annotate/exp_files/res_test_write_geneCDS.lst

-154	656	C	CDS	ESCO.0216.00005.i0015_5621221	abc	| new product | 454.12.5 | more information... dfd _ with _ pipe_characters...
+154	656	C	CDS	ESCO.0216.00005.i0015_5621221	abc	| new product | 454.12.5 | more information... dfd _ with _ pipe_characters... | mydb_pipe

test/data/annotate/exp_files/res_test_write_geneCRISPR.lst

-154	656	D	CRISPR	ESCO.0216.00005.b0015_CRISPR1	crispr	| crispr-array | NA | more information... dfd _ with _ pipe_characters...
+154	656	D	CRISPR	ESCO.0216.00005.b0015_CRISPR1	crispr	| crispr-array | NA | more information... dfd _ with _ pipe_characters... | mydb_pipe