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Commit 7677d952 authored by Amandine  PERRIN's avatar Amandine PERRIN
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Starting func test for pangenome working

parent 2fd9c5e6
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...@@ -45,9 +45,9 @@ def test_main(caplog): ...@@ -45,9 +45,9 @@ def test_main(caplog):
threads = 1 threads = 1
pan.main(lstinfo, name, DBPATH, min_id, outdir, clust_mode, spe_dir, threads) pan.main(lstinfo, name, DBPATH, min_id, outdir, clust_mode, spe_dir, threads)
prtbank = os.path.join(DBPATH, "testPAN4.1ll.prt") prtbank = os.path.join(DBPATH, "testPAN4.All.prt")
assert os.path.isfile(prtbank) assert os.path.isfile(prtbank)
os.remove(prtbank) os.remove(prtbank)
assert os.path.isdir(outdir) assert os.path.isdir(outdir)
check outdir content (presence of mmseq db, mmseq clust, tmp folder, #check outdir content (presence of mmseq db, mmseq clust, tmp folder,
families found in pangenome.) #families found in pangenome.)
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