Commit 829e0baa authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

Complete dockerfile to install barrnap and prokka

parent 7de645c2
Pipeline #1814 passed with stage
in 14 minutes and 1 second
from ubuntu:16.04
RUN apt-get update &&\
apt-get -y upgrade
# RUN yum install -y epel-release
# RUN yum install install -y python34-pip python34-devel postgresql-server gcc postgresql-devel
# ADD requirements.txt /requirements.txt
# RUN pip3 install -r requirements.txt
apt-get -y upgrade &&\
apt-get install -y \
python-pip \
wget &&\
apt-get clean
# Install barrnap
WORKDIR /tmp
RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
tar -xf 0.8.tar.gz &&\
rm 0.8.tar.gz
RUN ln -s /tmp/barrnap-0.8/bin/barrnap /usr/local/bin
# Install prokka:
WORKDIR /tmp
RUN apt-get install -y\
libdatetime-perl \
libxml-simple-perl \
libdigest-md5-perl \
git \
default-jre \
bioperl
RUN git clone https://github.com/tseemann/prokka.git
RUN /tmp/prokka/bin/prokka --setupdb
RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
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