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Amandine PERRIN
pipeline_annotation
Commits
829e0baa
Commit
829e0baa
authored
Apr 18, 2017
by
Amandine PERRIN
Browse files
Complete dockerfile to install barrnap and prokka
parent
7de645c2
Pipeline
#1814
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in 14 minutes and 1 second
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829e0baa
from
ubuntu:16.04
RUN
apt-get update
&&
\
apt-get
-y
upgrade
# RUN yum
install -y
epel-release
# RUN yum install install -y
python
34
-pip
python34-devel postgresql-server gcc postgresql-devel
# ADD requirements.txt /requirements.txt
# RUN pip3 install -r requirements.txt
apt-get
-y
upgrade
&&
\
apt-get
install
-y
\
python-pip
\
wget
&&
\
apt-get clean
# Install barrnap
WORKDIR
/tmp
RUN
wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz
&&
\
tar
-xf
0.8.tar.gz
&&
\
rm
0.8.tar.gz
RUN
ln
-s
/tmp/barrnap-0.8/bin/barrnap /usr/local/bin
# Install prokka:
WORKDIR
/tmp
RUN
apt-get
install
-y
\
libdatetime-perl
\
libxml-simple-perl
\
libdigest-md5-perl
\
git
\
default-jre
\
bioperl
RUN
git clone https://github.com/tseemann/prokka.git
RUN
/tmp/prokka/bin/prokka
--setupdb
RUN
ln
-s
/tmp/prokka/bin/prokka /usr/local/bin
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