@@ -19,6 +19,7 @@ This README file provides some essential information to install/use PanACoTA. Bu
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@@ -19,6 +19,7 @@ This README file provides some essential information to install/use PanACoTA. Bu
``PanACoTA`` (PANgenome with Annotations, COre identification, Tree and corresponding Alignments) is a software providing tools for large scale bacterial comparative genomics. You can download all refseq genomes for a given species, or use your set of complete and/or draft genomes, to:
``PanACoTA`` (PANgenome with Annotations, COre identification, Tree and corresponding Alignments) is a software providing tools for large scale bacterial comparative genomics. You can download all refseq genomes for a given species, or use your set of complete and/or draft genomes, to:
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@@ -29,6 +30,10 @@ This README file provides some essential information to install/use PanACoTA. Bu
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@@ -29,6 +30,10 @@ This README file provides some essential information to install/use PanACoTA. Bu
- Align all Core/Persistent families
- Align all Core/Persistent families
- Infer a phylogenetic tree from the Core/Persistent families
- Infer a phylogenetic tree from the Core/Persistent families
If you use PanACoTA, please cite:
If you use PanACoTA, please cite:
Amandine PERRIN, Eduardo P.C. ROCHA (2020). PanACoTA: A modular tool for massive microbial comparative genomics. BioRxiv.
Amandine PERRIN, Eduardo P.C. ROCHA (2020). PanACoTA: A modular tool for massive microbial comparative genomics. BioRxiv.
