tests for tol parameter as float

test/data/all/init_files/conffile-corepers.ini

+[DEFAULT]
+threads = 10
+#quiet = True
+verbose = 1
+
+[prepare]
+verbose = 4
+#NCBI_species_taxid =
+#NCBI_species =
+#tmp_dir =
+#db_dir =
+#info_file =
+#l90 = 100
+#nbcont = 999
+#cutn = 5
+min_dist = 0.01
+#max_dist = 0.06
+norefseq = True
+#only_mash = False
+
+[annotate]
+#prodigal_only = False
+#name =
+#date =
+#nbcont = 999
+#cutn = 5
+#qc_only = False
+
+[pangenome]
+#clust_mode = 1
+#outfile = mypan
+#spedir = myprots
+min_id = 0.85
+
+[corepers]
+tol = 0.85
+#multi = False
+#mixed = False
+#floor = False
+
+[tree]
+#soft = fasttree
+#model =
+#boot = False
+#write_boot = False
+#memory =
+fast = False
\ No newline at end of file

test/test_functional/test_all-parser.py

@@ -191,6 +191,28 @@ def test_annot_defvalue(capsys):
     assert not options.boot
 
 
+def test_corepers_tol(capsys):
+    """
+    Test when a float value is given for tol parameter of corepers
+    """
+    parser = argparse.ArgumentParser(description="Run all modules", add_help=False)
+    allm.build_parser(parser)
+    options = allm.parse(parser,
+                         "-c test/data/all/init_files/conffile-corepers.ini -o out-all -n TEST".split())
+    assert options.outdir == "out-all"
+    assert options.threads == 10
+    assert not options.ncbi_species_taxid
+    assert options.prodigal_only == False
+    assert options.min_dist == 0.01
+    assert options.norefseq
+    assert options.l90 == 100
+    assert options.clust_mode == 1
+    assert options.min_id == 0.85
+    assert options.tol == 0.85
+    assert not options.multi
+    assert not options.boot
+
+
 def test_parser_cutn_l90_nbcont():
     """
     When user gives custom value for cutn, l90 and/or nbcont, it keeps it. No replacement with annotate module.