Commit ba21edfe authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

Merge branch 'documentation' into dev

parents 5ab9ef44 331be6c1
Pipeline #62513 failed with stages
in 5 minutes and 59 seconds
......@@ -139,7 +139,8 @@ coverage:
- pip3 install -r requirements-dev.txt
- pwd
- coverage combine .coverage.unit .coverage.functional
# - coverage combine .coverage.unit .coverage.functional
- mv .coverage.functional .coverage
- coverage report -i
- coverage html -i
# test coverage parsing: \d+\%\s*$
......@@ -71,7 +71,6 @@ Configfile has the following format:
.. code-block:: text
param1 = "test"
param2 = test
param3= True
param4 =yes
......@@ -83,7 +82,7 @@ Where:
- `module` corresponds to the module for which you want to give a parameter (`prepare`, `annotate`, `pangenome`, `corepers`, `align`, `tree`).
- a boolean parameter is set with one of the boolean values (case-insensitive): 'yes'/'no', 'on'/'off', 'true'/'false' or '1'/'0' (examples with `param3`, `param4` and `param5` which are all booleans with True value)
- `""` are not mandatory for str arguments: `param1` and `param2` are the same.
- `""` around strings will be removed. It is better to avoid using them (ex: `param2 = test` instead of `param2 = "test"`)
- Use `#` to comment a line (information after a `#` will not be taken into account by the parser).
- Use `:` or `=` to delimit argument names from values
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