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Commit c67201e4 authored by Amandine  PERRIN's avatar Amandine PERRIN
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change pangenome filename

parent 68a1d5a0
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......@@ -378,10 +378,9 @@ def test_pangenome_all():
used_dbpath = os.path.join(GENEPATH, "database")
# copy db_path folder to output folder, as it will modify it
shutil.copytree(DBPATH, used_dbpath)
outfile = "pangenome.txt"
cmd = f"PanACoTA pangenome -l {lstinfo} -n {name} -d {used_dbpath} -o {GENEPATH} -vv"
assert pan.main(cmd, lstinfo, name, used_dbpath, min_id, GENEPATH, clust_mode, spe_dir,
threads) == os.path.join(GENEPATH, outfile)
threads) == os.path.join(GENEPATH, "PanGenome-testAllPAN4.All.prt-clust-0.8-mode1.lst")
# ret = subprocess.call(cmd.split())
# assert ret == 0
......
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