Commit c9e13fdf authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

update blastp installation for prokka

parent 2b3a42dc
Pipeline #23655 failed with stage
in 6 minutes and 25 seconds
......@@ -8,16 +8,17 @@ RUN apt-get update &&\
# Install packages needed and update pip
RUN apt-get install -y \
wget \
python3-pip \
python3
python3 \
python3-pip
RUN pip3 install --upgrade pip
# Update makeblastdb for prokka
# Update makeblastdb and blastp for prokka
WORKDIR /tmp
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.10.0+-x64-linux.tar.gz &&\
tar zxvpf ncbi-blast-2.10.0+-x64-linux.tar.gz &&\
cp /tmp/ncbi-blast-2.10.0+/bin/makeblastdb /usr/local/bin/ &&\
cp /tmp/ncbi-blast-2.10.0+/bin/blastp /usr/local/bin/ &&\
rm ncbi-blast-2.10.0+-x64-linux.tar.gz
......@@ -83,6 +84,7 @@ RUN wget http://www.microbesonline.org/fasttree/FastTree.c &&\
gcc -DOPENMP -fopenmp -DUSE_DOUBLE -Wall -O3 -finline-functions -funroll-loops -o FastTreeMP FastTree.c -lm &&\
ln -s /tmp/FastTreeMP /usr/local/bin
## Install FastME FastME 2.1.6.1
WORKDIR /tmp
RUN apt-get install -y automake &&\
......
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