Rename genomeAPCAT package to PanACoTA

PanACoTA/subcommands/annote.py

PanACoTA/subcommands/corepers.py

PanACoTA/subcommands/pangenome.py

PanACoTA/subcommands/tree.py

PanACoTA/tree_module/__init__.py

PanACoTA/tree_module/fastme_func.py

PanACoTA/tree_module/fasttree_func.py

PanACoTA/tree_module/quicktree_func.py

PanACoTA/utils.py

PanACoTA/utils_pangenome.py

bin/genomeAPCAT

make

setup.py

test/test_unit/test_pangenome/test_mmseq_func.py