add files to directly run example align step

Examples/commands/5-Align.sh

Examples/input_files/align-input/coregenome-example.lst

Examples/input_files/pan-input/Genes/GEN4.1111.00001.gen

Examples/input_files/pan-input/Genes/GENO.0321.00001.gen

Examples/input_files/pan-input/Genes/GENO.1216.00002.gen

Examples/input_files/pan-input/LSTINFO-list_genomes.lst

Examples/input_files/pan-input/Proteins/GEN4.1111.00001.prt

Examples/input_files/pan-input/Proteins/GENO.0321.00001.prt

Examples/input_files/pan-input/Proteins/GENO.1216.00002.prt

Examples/input_files/pan-input/Proteins/GENO3.All.prt