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Project 'bia/javadocparser' was moved to 'bia/icy/extensions/javadocparser'. Please update any links and bookmarks that may still have the old path.
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- .gitlab-ci.yml 8 additions, 7 deletions.gitlab-ci.yml
- MANIFEST.in 2 additions, 1 deletionMANIFEST.in
- PanACoTA/__init__.py 1 addition, 1 deletionPanACoTA/__init__.py
- PanACoTA/align_module/alignment.py 1 addition, 1 deletionPanACoTA/align_module/alignment.py
- PanACoTA/align_module/get_seqs.py 1 addition, 1 deletionPanACoTA/align_module/get_seqs.py
- PanACoTA/annotate_module/annotation_functions.py 25 additions, 24 deletionsPanACoTA/annotate_module/annotation_functions.py
- PanACoTA/annotate_module/format_prodigal.py 11 additions, 10 deletionsPanACoTA/annotate_module/format_prodigal.py
- PanACoTA/annotate_module/format_prokka.py 42 additions, 50 deletionsPanACoTA/annotate_module/format_prokka.py
- PanACoTA/annotate_module/general_format_functions.py 14 additions, 30 deletionsPanACoTA/annotate_module/general_format_functions.py
- PanACoTA/annotate_module/genome_seq_functions.py 4 additions, 12 deletionsPanACoTA/annotate_module/genome_seq_functions.py
- PanACoTA/prepare_module/download_genomes_func.py 6 additions, 2 deletionsPanACoTA/prepare_module/download_genomes_func.py
- PanACoTA/subcommands/align.py 2 additions, 20 deletionsPanACoTA/subcommands/align.py
- PanACoTA/subcommands/annotate.py 2 additions, 3 deletionsPanACoTA/subcommands/annotate.py
- PanACoTA/subcommands/prepare.py 40 additions, 21 deletionsPanACoTA/subcommands/prepare.py
- PanACoTA/utils.py 16 additions, 11 deletionsPanACoTA/utils.py
- PanACoTA/utils_argparse.py 24 additions, 0 deletionsPanACoTA/utils_argparse.py
- README.md 75 additions, 49 deletionsREADME.md
- containers/Singularity 1 addition, 1 deletioncontainers/Singularity
- containers/Singularity.1.0 157 additions, 0 deletionscontainers/Singularity.1.0
- containers/Singularity.1.0.1 157 additions, 0 deletionscontainers/Singularity.1.0.1
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