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Created with Raphaël 2.2.012Feb1029Jan2218Dec161098126Nov242017161211109654329Oct282623222019171615141287652129Sep2824222117141312119432131Aug27242221201918530Jul292827242322212017161598325Jun434May30Apr5Feb330Jan10Dec954328Nov2726211813125ask for 2 threads to check parallel quicktree errorreturn 0 when okstop all when QC onlylogger.details -> logger.log(detail_lvl)complete docstrings for 'all' module parameterschange header docstrings for functional testsupdate DOIUpdate README.mdUpdate README.mdupdate DOIpublished DOIcancel removed parametersWhen configfile is empty, create empty dict (or with empty sections if given)add test of 'all' module to CIno_refseq -> norefseqAdd tests for 'all' module parserremove useless parametersRaise error if duplication in parameters in config filereplace no_refseq by refseqadd all unit testsadapt pangenome testsadd unit tests until pangenomeinstall tbl2asn after prokkadockerdockeradapt pangenome tests to debug status of logstest running prokkatest: get content of test environmentchange message when 'run_cmd' fails, and adapt testsmodify error message when cmd failstest that fasttree is installed on test imagecorrect link to fasttreeMPadd all annotation testsremove test of prokka from CIinstall tbl2asn before bioperl and hmmerupdate prokka install for annote_and_1tree docker imageTests with tbl2asn installedAdd tbl2asm installationAdd hmmer installationAdd hmmer installationredo tests with new docker registryupdate prokka installation on ubuntu 20.04