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Amandine PERRIN
panacota
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opti
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15
containers
dev
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8
v1.4.1
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v1.2.0
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Created with Raphaël 2.2.0
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5
ask for 2 threads to check parallel quicktree error
return 0 when ok
stop all when QC only
logger.details -> logger.log(detail_lvl)
complete docstrings for 'all' module parameters
change header docstrings for functional tests
update DOI
Update README.md
Update README.md
update DOI
published DOI
cancel removed parameters
When configfile is empty, create empty dict (or with empty sections if given)
add test of 'all' module to CI
no_refseq -> norefseq
Add tests for 'all' module parser
remove useless parameters
Raise error if duplication in parameters in config file
replace no_refseq by refseq
add all unit tests
adapt pangenome tests
add unit tests until pangenome
install tbl2asn after prokka
docker
docker
adapt pangenome tests to debug status of logs
test running prokka
test: get content of test environment
change message when 'run_cmd' fails, and adapt tests
modify error message when cmd fails
test that fasttree is installed on test image
correct link to fasttreeMP
add all annotation tests
remove test of prokka from CI
install tbl2asn before bioperl and hmmer
update prokka install for annote_and_1tree docker image
Tests with tbl2asn installed
Add tbl2asm installation
Add hmmer installation
Add hmmer installation
redo tests with new docker registry
update prokka installation on ubuntu 20.04
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