Commits · master · Amandine PERRIN / panacota · GitLab

Jan 08, 2024
- Update dockerfile for version 1.4.1 · 007b3a65
  Amandine PERRIN authored Jan 08, 2024
  
  007b3a65
Sep 20, 2023
- v 1.4.2-dev1: small change in protein extraction · e20cee0f
  Amandine PERRIN authored Sep 20, 2023
  
  e20cee0f
- v 1.4.2-dev1: small change in protein extraction · 28535417
  Amandine PERRIN authored Sep 20, 2023
  
  28535417
- Small speed improvment while extracting proteins · fe28cbd6
  Amandine PERRIN authored Sep 20, 2023
  
  fe28cbd6
Sep 14, 2023
- v1.4.1 · 11efe170
  Amandine PERRIN authored Sep 14, 2023
  11efe170
- v1.4.1-dev4 : solves issue #42 · 34d58c52
  Amandine PERRIN authored Sep 14, 2023
  
  View commits for tag v1.4.1 v1.4.1
  
  34d58c52
- change pangenome filename · c67201e4
  Amandine PERRIN authored Sep 14, 2023
  
  c67201e4
- Change test all · 68a1d5a0
  Amandine PERRIN authored Sep 14, 2023
  
  68a1d5a0
Sep 07, 2023
- barrnap not installed in test image · d2b737df
  Amandine PERRIN authored Sep 07, 2023
  
  d2b737df
- update test barrnap · 52ac2a6b
  Amandine PERRIN authored Sep 07, 2023
  
  52ac2a6b
- adapt tests · d07a166a
  Amandine PERRIN authored Sep 07, 2023
  
  d07a166a
- update test barrnap · 83450be6
  Amandine PERRIN authored Sep 07, 2023
  
  83450be6
- fix install all · bfa057d3
  Amandine PERRIN authored Sep 07, 2023
  
  bfa057d3
- Remove check pip show · 4ecd4372
  Amandine PERRIN authored Sep 07, 2023
  
  4ecd4372
- Remove check pip show · abacfbd5
  Amandine PERRIN authored Sep 07, 2023
  
  abacfbd5
- uninstall panacota before testing installation · bcaa206a
  Amandine PERRIN authored Sep 07, 2023
  
  bcaa206a
- uninstall panacota before testing installation · 7aced162
  Amandine PERRIN authored Sep 07, 2023
  
  7aced162
- uninstall panacota before testing installation · 404628f3
  Amandine PERRIN authored Sep 07, 2023
  
  404628f3
- uninstall panacota before testing installation · 7fd804a8
  Amandine PERRIN authored Sep 07, 2023
  
  7fd804a8
- install dev requirements from pyproject.toml · 4079ca6d
  Amandine PERRIN authored Sep 07, 2023
  
  4079ca6d
- Use pyproject.toml instead of old setup.py · 1e2c7594
  Amandine PERRIN authored Sep 07, 2023
  
  1e2c7594
Sep 05, 2023
- Update functional tests with new option for mafft · 2ed31af6
  Amandine PERRIN authored Sep 05, 2023
  
  2ed31af6
- Change min requirement for ncbi_genome_download. · 8fbf1f2d
  Amandine PERRIN authored Sep 05, 2023
  8fbf1f2d
- Change --anysymbol to --amino for prot alignment · 3fabec8a
  Amandine PERRIN authored Sep 05, 2023
  
  3fabec8a
Jul 10, 2023
- dev version 2 : use --anysymbol with mafft to be able to use unusual characters · ff9c8a05
  Amandine PERRIN authored Jul 10, 2023
  
  ff9c8a05
- Merge branch 'master' into dev · a0bb6929
  Amandine PERRIN authored Jul 10, 2023
  
  a0bb6929
- Add option anysymbol to mafft · 728445dd
  Amandine PERRIN authored Jul 10, 2023
  
  728445dd
- update merged dockerfile · eaebd34c
  Amandine PERRIN authored Jul 10, 2023
  
  eaebd34c
- Merge branch 'dev' · cde122ca
  Amandine PERRIN authored Jul 10, 2023
  
  cde122ca
- v1.4.1-dev2 : problem with protein names solved · 099dbcc0
  Amandine PERRIN authored Jul 10, 2023
  
  099dbcc0
- Dockerfile for panacota users · b37f1e59
  Amandine PERRIN authored Jul 10, 2023
  
  b37f1e59
- Change dockerfile for CI · a8e3b551
  Amandine PERRIN authored Jul 10, 2023
  
  a8e3b551
Jul 03, 2023
- install patch version of ncbi-genome-download · 277686ac
  Amandine PERRIN authored Jul 03, 2023
  
  277686ac
- update versions in dockerfile · a8b816f3
  Amandine PERRIN authored Jul 03, 2023
  
  a8b816f3
- install patch version of ncbi-genome-download · 9f522308
  Amandine PERRIN authored Jul 03, 2023
  
  9f522308
- update versions in dockerfile · f67ea743
  Amandine PERRIN authored Jul 03, 2023
  
  f67ea743
- Change protein name extraction method · 72cd4383
  Amandine PERRIN authored Jul 03, 2023
  
  72cd4383
Feb 09, 2023
- Merge branch 'master' into dev · a3dd47b5
  Amandine PERRIN authored Feb 09, 2023
  
  a3dd47b5
- Accept only formats with 3 dots, not >=3 · 4d06212f
  Amandine PERRIN authored Feb 09, 2023
  
  4d06212f
Jan 31, 2023
- genome name cannot have more than 3 '.' separated fields · faaee1ca
  Amandine PERRIN authored Jan 31, 2023
  
  faaee1ca