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Amandine PERRIN
panacota
Commits
4ecd4372
Commit
4ecd4372
authored
1 year ago
by
Amandine PERRIN
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Remove check pip show
parent
abacfbd5
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Pipeline
#110448
failed
1 year ago
Stage: build
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test/test_install/test_make_prokka-quicktree.py
+23
-23
23 additions, 23 deletions
test/test_install/test_make_prokka-quicktree.py
with
23 additions
and
23 deletions
test/test_install/test_make_prokka-quicktree.py
+
23
−
23
View file @
4ecd4372
...
...
@@ -52,17 +52,17 @@ def test_install_prokka_quicktree():
assert
utils
.
check_installed
(
"
prokka
"
)
assert
utils
.
check_installed
(
"
PanACoTA
"
)
assert
utils
.
check_installed
(
'
quicktree
'
)
#
cmd = "pip3 show PanACoTA"
#
err = "error pip3"
#
stdout = "stdout_pip3show.out"
#
with open(stdout, "w") as stdof:
#
utils.run_cmd(cmd, err, stdout=stdof, stderr=stdof)
#
with open(stdout, "r") as stdof:
#
for line in stdof:
#
if line.startswith("Location"):
#
loc = line.split()[-1]
#
assert glob.glob(os.path.join(loc, r'PanACoTA*dist-info'))
#
os.remove(stdout)
cmd
=
"
pip3 show PanACoTA
"
err
=
"
error pip3
"
stdout
=
"
stdout_pip3show.out
"
with
open
(
stdout
,
"
w
"
)
as
stdof
:
utils
.
run_cmd
(
cmd
,
err
,
stdout
=
stdof
,
stderr
=
stdof
)
with
open
(
stdout
,
"
r
"
)
as
stdof
:
for
line
in
stdof
:
if
line
.
startswith
(
"
Location
"
):
loc
=
line
.
split
()[
-
1
]
assert
glob
.
glob
(
os
.
path
.
join
(
loc
,
r
'
PanACoTA*dist-info
'
))
os
.
remove
(
stdout
)
logfile
=
"
install.log
"
content
=
[
"
Installing PanACoTA...
"
,
"
DONE
"
,
"
Some dependencies needed for some subcommands of PanACoTA are
"
...
...
@@ -148,18 +148,18 @@ def test_develop():
assert
utils
.
check_installed
(
"
prokka
"
)
assert
utils
.
check_installed
(
"
PanACoTA
"
)
assert
utils
.
check_installed
(
'
quicktree
'
)
cmd
=
"
pip3 show PanACoTA
"
err
=
"
error pip3
"
stdout
=
"
stdout_pip3show.out
"
with
open
(
stdout
,
"
w
"
)
as
stdof
:
utils
.
run_cmd
(
cmd
,
err
,
stdout
=
stdof
,
stderr
=
stdof
)
# Check installation in develop mode
with
open
(
stdout
,
"
r
"
)
as
stdof
:
for
line
in
stdof
:
if
line
.
startswith
(
"
Location
"
):
loc
=
line
.
split
()[
-
1
]
assert
glob
.
glob
(
os
.
path
.
join
(
loc
,
r
'
PanACoTA*egg-info
'
))
os
.
remove
(
stdout
)
#
cmd = "pip3 show PanACoTA"
#
err = "error pip3"
#
stdout = "stdout_pip3show.out"
#
with open(stdout, "w") as stdof:
#
utils.run_cmd(cmd, err, stdout=stdof, stderr=stdof)
#
#
Check installation in develop mode
#
with open(stdout, "r") as stdof:
#
for line in stdof:
#
if line.startswith("Location"):
#
loc = line.split()[-1]
#
assert glob.glob(os.path.join(loc, r'PanACoTA*egg-info'))
#
os.remove(stdout)
logfile
=
"
install.log
"
content
=
[
"
Installing PanACoTA...
"
,
"
Installing developer packages needed for PanACoTA
"
,
...
...
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