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 # CS Denoising
 
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+This is the repository for the source code of *CS Denoising*, a plugin for the [bioimage analysis software Icy](http://icy.bioimageanalysis.org/), which was developed by members or former members of the [Biological Image Analysis unit at Institut Pasteur](https://research.pasteur.fr/en/team/bioimage-analysis/). This plugin is licensed under GPL3 license.     
+Icy is developed and maintained by [Biological Image Analysis unit at Institut Pasteur](https://research.pasteur.fr/en/team/bioimage-analysis/). The [source code of Icy](https://gitlab.pasteur.fr/bia/icy) is also licensed under a GPL3 license.     
+
+
+
+## Plugin description
+
+<!-- Short description of goals of package, with descriptive links to the documentation website --> 
+
+Image denoising based on fusing multiple Compressed Sensing (CS) reconstructions, taking advantage of the robustness of CS in the presence of noise via regularized reconstructions and the properties of the Fourier transform of bioimages. Multiple reconstructions at low sampling rates are combined to generate high quality denoised images using several sparsity constraints.
+
+This plugin use the Matlab function caller plugin to work so you need to have MATLAB installed on your system and have Matlab function caller plugin properly configured.        
+A more detailed user documentation can be found on the CS Denoising documentation page on the Icy website: http://icy.bioimageanalysis.org/plugin/cs-denoising-matlab-version/               
+
+
+## Installation instructions
+
+For end-users, refer to the documentation on the Icy website on [how to install an Icy plugin](http://icy.bioimageanalysis.org/tutorial/how-to-install-an-icy-plugin/).      
+
+For developers, see our [Contributing guidelines](https://gitlab.pasteur.fr/bia/icy/-/blob/master/CONTRIBUTING.md) and [Code of Conduct](https://gitlab.pasteur.fr/bia/icy/-/blob/master/CODE-OF-CONDUCT.md).      
+
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+
+
+## Main functions and usage
+
+<!-- list main functions, explain architecture, classname, give info on how to get started with the plugin. If applicable, how the package compares to other similar packages and/or how it relates to other packages -->
+
+Classname: `plugins.stef.denoising.CSDenoising`
+
+
+
+## Citation 
+
+Please cite this plugins as follows:          
+
+
+Please also cite the Icy software and mention the version of Icy you used (bottom right corner of the GUI or first lines of the Output tab):     
+de Chaumont, F. et al. (2012) Icy: an open bioimage informatics platform for extended reproducible research, [Nature Methods](https://www.nature.com/articles/nmeth.2075), 9, pp. 690-696       
+http://icy.bioimageanalysis.org    
+
+
+
+## Author(s)      
+
+Stephane Dallongeville
+
+
+## Additional information
+
+
+
+
+
+