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Commit 667f16f3 authored by Amandine TOURNAY's avatar Amandine TOURNAY
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.gitignore 0 → 100644
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.idea/
target/
.settings/
*.iml
.project
.classpath
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pom.xml 0 → 100644
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<!-- Inherited Icy Parent POM -->
<parent>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>parent-pom-plugin</artifactId>
<version>1.0.3</version>
</parent>
<!-- Project Information -->
<artifactId>opencv</artifactId>
<version>4.5.1</version>
<packaging>jar</packaging>
<name>OpenCV</name>
<description>OpenCV (Open Computer Vision) library for Icy. see more at http://opencv.org</description>
<url>http://icy.bioimageanalysis.org/plugin/opencv/</url>
<inceptionYear>2020</inceptionYear>
<organization>
<name>Institut Pasteur</name>
<url>https://pasteur.fr</url>
</organization>
<licenses>
<license>
<name>GNU GPLv3</name>
<url>https://www.gnu.org/licenses/gpl-3.0.en.html</url>
<distribution>repo</distribution>
</license>
</licenses>
<developers>
<developer>
<id>sdallongeville</id>
<name>Stéphane Dallongeville</name>
<url>https://research.pasteur.fr/fr/member/stephane-dallongeville/</url>
<roles>
<role>founder</role>
<role>lead</role>
<role>architect</role>
<role>developer</role>
<role>debugger</role>
<role>tester</role>
<role>maintainer</role>
<role>support</role>
</roles>
</developer>
</developers>
<!-- Project properties -->
<properties>
</properties>
<!-- Project build configuration -->
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>3.1.1</version>
<executions>
<execution>
<id>${project.artifactId}-fetch</id>
<phase>generate-sources</phase>
<goals>
<goal>unpack-dependencies</goal>
</goals>
<configuration>
<includeArtifactIds>opencv</includeArtifactIds>
<outputDirectory>${project.build.outputDirectory}</outputDirectory>
<stripVersion>true</stripVersion>
<excludeTransitive>true</excludeTransitive>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
<!-- List of project's dependencies -->
<dependencies>
<!-- The core of Icy -->
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>icy-kernel</artifactId>
</dependency>
<dependency>
<groupId>org.openpnp</groupId>
<artifactId>opencv</artifactId>
<version>4.5.1-0</version>
</dependency>
</dependencies>
<!-- Icy Maven repository (to find parent POM) -->
<repositories>
<repository>
<id>icy</id>
<name>Icy's Nexus</name>
<url>https://icy-nexus.pasteur.fr/repository/Icy/</url>
</repository>
</repositories>
</project>
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src/main/java/plugins/adufour/opencv/OpenCV.java 0 → 100644
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src/main/java/plugins/adufour/opencv/OpenCVCapture.java 0 → 100644
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package plugins.adufour.opencv;
import java.lang.reflect.Field;
import java.util.ArrayList;
import java.util.List;
import javax.swing.JSeparator;
import org.opencv.core.Mat;
import org.opencv.videoio.VideoCapture;
import org.opencv.videoio.Videoio;
import icy.image.IcyBufferedImage;
import icy.main.Icy;
import icy.math.FPSMeter;
import icy.sequence.Sequence;
import icy.sequence.SequenceAdapter;
import plugins.adufour.ezplug.EzPlug;
import plugins.adufour.ezplug.EzStoppable;
import plugins.adufour.ezplug.EzVar;
import plugins.adufour.ezplug.EzVarInteger;
import plugins.adufour.ezplug.EzVarListener;
import plugins.adufour.vars.util.VarException;
public class OpenCVCapture extends EzPlug implements EzStoppable, EzVarListener<Integer>
{
List<EzVarInteger> parameters = new ArrayList<EzVarInteger>();
VideoCapture camera = null;
@Override
protected void initialize()
{
OpenCV.initialize();
for (Field f : Videoio.class.getDeclaredFields())
{
String name = f.getName();
if (!name.startsWith("CAP_PROP_")) continue;
if (name.contains("_DC1394")) continue;
if (name.contains("_GIGA")) continue;
if (name.contains("_GPHOTO2")) continue;
if (name.contains("_GSTREAMER")) continue;
if (name.contains("_INTELPERC")) continue;
if (name.contains("_IOS")) continue;
if (name.contains("_OPENNI")) continue;
if (name.contains("_POS")) continue;
if (name.contains("_PVAPI")) continue;
if (name.contains("_XI")) continue;
name = name.substring(9).toLowerCase();
EzVarInteger setting = new EzVarInteger(name);
setting.setValue(Integer.valueOf(-1));
setting.addVarChangeListener(this);
parameters.add(setting);
}
int cpt = 0;
for (EzVarInteger setting : parameters)
{
addEzComponent(setting);
cpt++;
if (cpt % 20 == 0) addComponent(new JSeparator(JSeparator.VERTICAL));
}
}
@Override
protected void execute()
{
camera = new VideoCapture(0);
for (EzVarInteger setting : parameters)
{
if (setting.getValue() == -1) continue;
String propName = "CAP_PROP_" + setting.name.toUpperCase();
try
{
int propID = Videoio.class.getDeclaredField(propName).getInt(null);
camera.set(propID, setting.getValue());
}
catch (Exception e)
{
throw new VarException(setting.getVariable(), e.getMessage());
}
}
// Read the first image to initialize the meta-data
Mat mat = new Mat();
camera.read(mat);
IcyBufferedImage image = OpenCV.convertToIcy(mat);
// Create the sequence
final Sequence s = new Sequence("Live webcam", image);
Icy.getMainInterface().addSequence(s);
// don't update the channel bounds on update
image.setAutoUpdateChannelBounds(false);
s.setAutoUpdateChannelBounds(false);
// Closing the sequence should stop the camera
final Thread thread = Thread.currentThread();
s.addListener(new SequenceAdapter()
{
@Override
public void sequenceClosed(Sequence sequence)
{
s.removeListener(this);
thread.interrupt();
}
});
FPSMeter fps = new FPSMeter();
try
{
while (camera.read(mat) && !Thread.currentThread().isInterrupted())
{
OpenCV.convertToIcy(mat, image);
image.dataChanged();
fps.update();
getUI().setProgressBarMessage("Acquiring at " + fps.getFPS() + "fps");
}
}
catch (Exception e)
{
}
finally
{
camera.release();
}
}
@Override
public void clean()
{
for (EzVarInteger setting : parameters)
setting.removeVarChangeListener(this);
parameters.clear();
}
@Override
public void variableChanged(EzVar<Integer> source, Integer newValue)
{
if (camera == null) return;
String propName = "CAP_PROP_" + source.name.toUpperCase();
try
{
int propID = Videoio.class.getDeclaredField(propName).getInt(null);
camera.set(propID, newValue);
}
catch (Exception e)
{
throw new VarException(source.getVariable(), e.getMessage());
}
}
}
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