pom.xml

@@ -8,18 +8,18 @@
     <parent>
 		<artifactId>pom-icy</artifactId>
         <groupId>org.bioimageanalysis.icy</groupId>
-        <version>2.0.0</version>
+        <version>2.1.0</version>
 	</parent>
 
     <!-- Project Information -->
     <artifactId>msd-track-processor</artifactId>
-    <version>1.1.3</version>
+    <version>1.1.4-SNAPSHOT</version>
 
     <packaging>jar</packaging>
 
     <name>MSD Track Processor</name>
     <description>Track Processor computing the MSD (Mean Square Displacement).</description>
-    <url>http://icy.bioimageanalysis.org/plugin/track-processor-msd/</url>
+    <url>https://icy.bioimageanalysis.org/plugin/track-processor-msd/</url>
     <inceptionYear>2020</inceptionYear>
 
     <organization>
@@ -58,52 +58,31 @@
 
     </properties>
 
-    <profiles>
-        <profile>
-            <id>icy-plugin</id>
-            <activation>
-                <activeByDefault>true</activeByDefault>
-            </activation>
-        </profile>
-    </profiles>
-
     <!-- List of project's dependencies -->
     <dependencies>
-        <!-- The core of Icy -->
-        <dependency>
-            <groupId>org.bioimageanalysis.icy</groupId>
-            <artifactId>icy-kernel</artifactId>
-			<version>${icy-kernel.version}</version>
-        </dependency>
-
         <dependency>
             <groupId>org.bioimageanalysis.icy</groupId>
             <artifactId>jfreechart</artifactId>
-			<version>${jfreechart.version}</version>
         </dependency>
 		
 		<dependency>
 			<groupId>net.sourceforge.jexcelapi</groupId>
 			<artifactId>jxl</artifactId>
-			<version>${jxl.version}</version>
 		</dependency>
 
         <dependency>
             <groupId>org.bioimageanalysis.icy</groupId>
             <artifactId>spot-detection-utilities</artifactId>
-			<version>${spot-detection-utilities.version}</version>
         </dependency>
 
         <dependency>
             <groupId>org.bioimageanalysis.icy</groupId>
             <artifactId>distance-profiler</artifactId>
-			<version>${distance-profiler.version}</version>
         </dependency>
 		
 		<dependency>
             <groupId>org.bioimageanalysis.icy</groupId>
             <artifactId>track-manager</artifactId>
-			<version>${track-manager.version}</version>
         </dependency>
     </dependencies>
 

src/main/java/plugins/fab/trackmanager/processors/TrackProcessorMSD.java

@@ -238,7 +238,9 @@ public class TrackProcessorMSD extends PluginTrackManagerProcessor implements Ac
         if (useRealScalesBox.isSelected())
         {
             int cnt = 0;
-            int row = 0;
+            int row = 1; // Start from 1 because of table head
+            int cols = 0;
+
             for (TrackSegment ts : trackPool.getTrackSegmentList())
             {
                 // Better to allow partially clipped tracks otherwise we cannot get MSD for them (Stephane)
@@ -249,6 +251,10 @@ public class TrackProcessorMSD extends PluginTrackManagerProcessor implements Ac
 
                     if (msd.length > 0)
                     {
+                        // Get max cols for the table
+                        if (msd.length > cols)
+                            cols = msd.length;
+
                         System.out.println("track " + cnt);
 
                         if (page != null)
@@ -268,11 +274,22 @@ public class TrackProcessorMSD extends PluginTrackManagerProcessor implements Ac
                     }
                 }
             }
+
+            // Write table head
+            if (page != null) {
+                XLSUtil.setCellString(page, 0, 0, "frame");
+                if (cols > 0) {
+                    for (int c = 0; c < cols; c++) {
+                        XLSUtil.setCellString(page, c+1, 0, String.valueOf(c));
+                    }
+                }
+            }
         }
         else
         {
             int cnt = 0;
-            int row = 0;
+            int row = 1; // Start from 1 because of table head
+            int cols = 0;
 
             for (TrackSegment ts : trackPool.getTrackSegmentList())
             {
@@ -284,6 +301,10 @@ public class TrackProcessorMSD extends PluginTrackManagerProcessor implements Ac
 
                     if (msd.length > 0)
                     {
+                        // Get max cols for the table
+                        if (msd.length > cols)
+                            cols = msd.length;
+
                         System.out.println("track " + cnt);
 
                         if (page != null)
@@ -302,6 +323,16 @@ public class TrackProcessorMSD extends PluginTrackManagerProcessor implements Ac
                     }
                 }
             }
+
+            // Write table head
+            if (page != null) {
+                XLSUtil.setCellString(page, 0, 0, "frame");
+                if (cols > 0) {
+                    for (int c = 0; c < cols; c++) {
+                        XLSUtil.setCellString(page, c+1, 0, String.valueOf(c));
+                    }
+                }
+            }
         }
 
         if (workbook != null)