updated pom to v2.0.0-a.1, fix classes accordingly to new architecture, added...

updated pom to v2.0.0-a.1, fix classes accordingly to new architecture, added icon, updated .gitignore

.gitignore

-.idea/
+/build*
+/workspace
+setting.xml
+release/
 target/
-.settings/
+!.mvn/wrapper/maven-wrapper.jar
+!**/src/main/**/target/
+!**/src/test/**/target/
+icy.log
+
+### IntelliJ IDEA ###
+.idea/
+*.iws
 *.iml
+*.ipr
+
+### Eclipse ###
+.apt_generated
+.classpath
+.factorypath
 .project
-.classpath
\ No newline at end of file
+.settings
+.springBeans
+.sts4-cache
+
+### NetBeans ###
+/nbproject/private/
+/nbbuild/
+/dist/
+/nbdist/
+/.nb-gradle/
+build/
+!**/src/main/**/build/
+!**/src/test/**/build/
+
+### VS Code ###
+.vscode/
+
+### Mac OS ###
+**/.DS_Store
+Icon?
\ No newline at end of file

pom.xml

@@ -6,23 +6,21 @@
 
     <!-- Inherited Icy Parent POM -->
     <parent>
-		<artifactId>pom-icy</artifactId>
+        <artifactId>pom-icy</artifactId>
         <groupId>org.bioimageanalysis.icy</groupId>
-        <version>2.1.0</version>
-	</parent>
+        <version>3.0.0-a.1</version>
+    </parent>
 
     <!-- Project Information -->
     <artifactId>path-intensity-profiler</artifactId>
-    <version>1.2.3</version>
-
-    <packaging>jar</packaging>
+    <version>2.0.0-a.1</version>
 
     <name>Path Intensity Profiler</name>
     <description>
         This plugin will compute the intensity profile of ROI contour along Z (3D) and T (timelaps) dimension. It generates a workbook document containing all the intensity values which can be used to display graph or be saved as XLSX or CSV format.
         The plugin is compatible with Protocols.
     </description>
-    <url>http://icy.bioimageanalysis.org/plugin/path-intensity-profil/</url>
+    <url>https://icy.bioimageanalysis.org/plugin/path-intensity-profil/</url>
     <inceptionYear>2020</inceptionYear>
 
     <organization>
@@ -56,40 +54,24 @@
         </developer>
     </developers>
 
-    <!-- Project properties -->
-    <properties>
-
-    </properties>
-
-    <profiles>
-        <profile>
-            <id>icy-plugin</id>
-            <activation>
-                <activeByDefault>true</activeByDefault>
-            </activation>
-        </profile>
-    </profiles>
-
     <!-- List of project's dependencies -->
     <dependencies>
-        <!-- The core of Icy -->
         <dependency>
             <groupId>org.bioimageanalysis.icy</groupId>
-            <artifactId>icy-kernel</artifactId>
-			<version>${icy-kernel.version}</version>
+            <artifactId>kernel-extensions</artifactId>
         </dependency>
-
-        <!-- The EzPlug library, simplifies writing UI for Icy plugins. -->
         <dependency>
             <groupId>org.bioimageanalysis.icy</groupId>
             <artifactId>ezplug</artifactId>
-			<version>${ezplug.version}</version>
+        </dependency>
+        <dependency>
+            <groupId>org.bioimageanalysis.icy</groupId>
+            <artifactId>protocols</artifactId>
         </dependency>
 
         <dependency>
             <groupId>org.bioimageanalysis.icy</groupId>
             <artifactId>workbooks</artifactId>
-			<version>${workbooks.version}</version>
         </dependency>
     </dependencies>
 
@@ -97,8 +79,7 @@
     <repositories>
         <repository>
             <id>icy</id>
-            <name>Icy's Nexus</name>
-            <url>https://icy-nexus.pasteur.fr/repository/Icy/</url>
+            <url>https://nexus-icy.pasteur.cloud/repository/icy/</url>
         </repository>
     </repositories>
 </project>