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bis-aria
ariaec
Commits
210ea276
Commit
210ea276
authored
Apr 11, 2018
by
Fabrice ALLAIN
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Merge branch '3-uniformization-of-docs-between-aria-and-conbox'
parents
d9d73499
705ef9eb
Changes
7
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7 changed files
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14 additions
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22 deletions
+14
-22
COPYRIGHT
COPYRIGHT
+0
-7
aria.shub
aria.shub
+1
-1
docs/contents.rst
docs/contents.rst
+2
-0
docs/examples/ec.rst
docs/examples/ec.rst
+0
-0
docs/examples/ecnmr.rst
docs/examples/ecnmr.rst
+0
-0
docs/installation.rst
docs/installation.rst
+2
-2
setup.py
setup.py
+9
-12
No files found.
COPYRIGHT
View file @
210ea276
"""
ARIA -- Ambiguous Restraints for Iterative Assignment
A software for automated NOE assignment
...
...
@@ -19,9 +18,3 @@ a warranty of non-infringement.
Distribution of substantively modified versions of this module is
prohibited without the explicit permission of the copyright holders.
$Author: bardiaux $
$Revision: 1.1.1.1 $
$Date: 2010/03/23 15:27:16 $
"""
aria.shub
View file @
210ea276
...
...
@@ -20,7 +20,7 @@ FROM: centos:centos7
# installing ariaec #
#################################
cd /
ARIAEC_VERS="0.
2.3
"
ARIAEC_VERS="0.
1.0
"
wget -O ariaec-${ARIAEC_VERS}.tar.gz https://gitlab.pasteur.fr/bis-aria/ariaec/repository/master/archive.tar.gz
mkdir ariaec-${ARIAEC_VERS} && tar xzf ariaec-${ARIAEC_VERS}.tar.gz -C ariaec-${ARIAEC_VERS} --strip-components 1
cd ariaec-${ARIAEC_VERS}
...
...
docs/contents.rst
View file @
210ea276
...
...
@@ -19,3 +19,5 @@
:caption: Examples
examples/index
examples/ec
examples/ecnmr
\ No newline at end of file
docs/examples/ec.rst
0 → 100644
View file @
210ea276
docs/examples/ecnmr.rst
0 → 100644
View file @
210ea276
docs/installation.rst
View file @
210ea276
...
...
@@ -48,7 +48,7 @@ the transition to Python 3 is planned in the near future.
.. code-block:: shell
cd ariaec-master
mkdir build_aria && cp -r aria setup.py PKG-INFO build_aria/
mkdir build_aria && cp -r aria setup.py PKG-INFO
MANIFEST.in
build_aria/
cd build_aria
pip install --user .
...
...
@@ -63,7 +63,7 @@ allowing cross platform and legacy OS support.
sudo singularity build aria.simg aria.shub
The
CLI:abbr:`Command Line Interface
` described in :doc:`usage` section will
The
:abbr:`Command Line Interface (CLI)
` described in :doc:`usage` section will
then be accessible by calling the generated singularity image.
.. code-block:: shell
...
...
setup.py
View file @
210ea276
...
...
@@ -118,16 +118,13 @@ def get_version(full=True):
print
(
'Unable to get git index status'
)
sys
.
exit
(
1
)
if
dirty
!=
''
and
full
:
version
+=
'.dev1'
else
:
# Extract the version from the PKG-INFO file.
with
open
(
join
(
d
,
'PKG-INFO'
))
as
foo
:
version
=
VERSION_REC
.
search
(
foo
.
read
()).
group
(
1
)
version
=
VERSION_REC
.
search
(
foo
.
read
()).
group
(
2
)
return
version
...
...
@@ -287,8 +284,8 @@ def setup_package():
'examples'
:
[
'*'
],
'examples-dev'
:
[
'*'
]},
# Using MANIFEST file,
we do not need package_data which doesn't work
# for all kind of building process ...
# Using MANIFEST file,
it seems we do not need package_data which
#
doesn't work
for all kind of building process ...
# package_data={
# # If any package contains these files, include them
# '': [
...
...
@@ -299,12 +296,12 @@ def setup_package():
# '*.link', '*.psf', '*.sol', '*.pro', '*.pep'],
# # And include files found in the 'conbox' package, too:
# 'aria.conbox': ['conf/*',
# 'templates/*',
# 'data/pdbdists/*'
# 'data/cullpdb/160427/*',
# 'data/cullpdb/170315/*'
# 'data/*',
# ],
#
'templates/*',
#
'data/pdbdists/*'
#
'data/cullpdb/160427/*',
#
'data/cullpdb/170315/*'
#
'data/*',
#
],
# },
# If we want to include non data files (documentation, examples, ..)
...
...
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