Addign sigma mode parameter in aria project templates

ariaec/conf/aria_ec.ini

@@ -151,6 +151,7 @@ calib_estimator:                            ratio_of_averages
 calib_error_estimator:                      distance
 viol_violation_tolerance:                   1000.0,5.0,3.0,1.0,1.0,1.0,0.1,0.1,0.1
 viol_violation_threshold:                   0.5
+viol_sigma_mode:                            fix
 partassign_weight_threshold:                1.0,0.9999,0.999,0.99,0.98,0.96,0.93,0.9,0.8
 partassign_max_contributions:               1000
 partassign_exponent:                        6

ariaec/templates/aria_project_v2.3.0.xml

@@ -46,7 +46,7 @@
       <assignment/>
       <merging method="${merging_method}"/>
       <calibration relaxation_matrix="${calib_relaxation_matrix}" distance_cutoff="${calib_distance_cutoff}" estimator="${calib_estimator}" error_estimator="${calib_error_estimator}"/>
-      <violation_analysis violation_tolerance="${viol_violation_tolerance[iter]}" violation_threshold="${viol_violation_threshold}"/>
+      <violation_analysis violation_tolerance="${viol_violation_tolerance[iter]}" violation_threshold="${viol_violation_threshold}" sigma_mode="${viol_sigma_mode}"/>
       <partial_assignment  weight_threshold="${partassign_weight_threshold[iter]}" max_contributions="${partassign_max_contributions}"/>
       <network_anchoring high_residue_threshold="${netanch_high_residue_threshold}" enabled="${netanch_enabled}" min_residue_threshold="${netanch_min_residue_threshold}" min_atom_threshold="${netanch_min_atom_threshold}"/>
     </iteration>

ariaec/templates/aria_project_v2.3.2.xml

@@ -47,7 +47,7 @@
       <assignment/>
       <merging method="${merging_method}"/>
       <calibration relaxation_matrix="${calib_relaxation_matrix}" distance_cutoff="${calib_distance_cutoff}" estimator="${calib_estimator}" error_estimator="${calib_error_estimator}"/>
-      <violation_analysis violation_tolerance="${viol_violation_tolerance[iter]}" violation_threshold="${viol_violation_threshold}"/>
+      <violation_analysis violation_tolerance="${viol_violation_tolerance[iter]}" violation_threshold="${viol_violation_threshold}"  sigma_mode="${viol_sigma_mode}"/>
       <partial_assignment weight_threshold="${partassign_weight_threshold[iter]}" max_contributions="${partassign_max_contributions}" exponent="${partassign_exponent}"/>
       <network_anchoring high_residue_threshold="${netanch_high_residue_threshold}" enabled="${netanch_enabled}" min_residue_threshold="${netanch_min_residue_threshold}" min_atom_threshold="${netanch_min_atom_threshold}"/>
     </iteration>