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bis-aria
ariaec
Commits
d171f050
Commit
d171f050
authored
Apr 24, 2018
by
Fabrice Allain
Browse files
docs: updated usage section
parent
e159414f
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3
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CHANGELOG
View file @
d171f050
<a name="0.0.18"></a>
## <small>0.0.18 (2018-04-2
3
)</small>
## <small>0.0.18 (2018-04-2
4
)</small>
* docs: Added bpt1 setup in examples ([a76abff](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a76abff))
* docs: Added link to example archive in docs ([9ec966b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9ec966b))
* docs: Added MALE_ECOLI example data ([4877131](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4877131))
* docs: updated changelog ([ceececc](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ceececc))
* docs: updated changelog ([95d3f62](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/95d3f62))
* docs: Updated changelog (removed old tags) ([a59416d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a59416d))
...
...
aria/conbox/commands.py
View file @
d171f050
...
...
@@ -260,8 +260,7 @@ class AriaEcCommands(object):
parser
.
add_argument
(
"seq"
,
help
=
"sequence file [FASTA]"
,
action
=
ReadableFile
)
parser
.
add_argument
(
"msa"
,
nargs
=
'?'
,
help
=
"MSA [FASTA] for diversityvalue"
"used with bbcontacts"
)
help
=
"MSA [FASTA] used to compute diversityvalue "
)
parser
.
add_argument
(
"-t"
,
"--type"
,
required
=
True
,
dest
=
"contact_type"
,
choices
=
self
.
contact_types
,
help
=
"Infile contact "
"type"
)
...
...
docs/usage.rst
View file @
d171f050
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