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bis-aria
ariaec
Commits
d171f050
Commit
d171f050
authored
7 years ago
by
Fabrice Allain
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docs: updated usage section
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CHANGELOG
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-1
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CHANGELOG
aria/conbox/commands.py
+1
-2
1 addition, 2 deletions
aria/conbox/commands.py
docs/usage.rst
+184
-8
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docs/usage.rst
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11 deletions
CHANGELOG
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d171f050
<a name="0.0.18"></a>
## <small>0.0.18 (2018-04-2
3
)</small>
## <small>0.0.18 (2018-04-2
4
)</small>
* docs: Added bpt1 setup in examples ([a76abff](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a76abff))
* docs: Added link to example archive in docs ([9ec966b](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/9ec966b))
* docs: Added MALE_ECOLI example data ([4877131](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/4877131))
* docs: updated changelog ([ceececc](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/ceececc))
* docs: updated changelog ([95d3f62](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/95d3f62))
* docs: Updated changelog (removed old tags) ([a59416d](https://gitlab.pasteur.fr/bis-aria/Ariaec/commit/a59416d))
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aria/conbox/commands.py
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@@ -260,8 +260,7 @@ class AriaEcCommands(object):
parser
.
add_argument
(
"
seq
"
,
help
=
"
sequence file [FASTA]
"
,
action
=
ReadableFile
)
parser
.
add_argument
(
"
msa
"
,
nargs
=
'
?
'
,
help
=
"
MSA [FASTA] for diversityvalue
"
"
used with bbcontacts
"
)
help
=
"
MSA [FASTA] used to compute diversityvalue
"
)
parser
.
add_argument
(
"
-t
"
,
"
--type
"
,
required
=
True
,
dest
=
"
contact_type
"
,
choices
=
self
.
contact_types
,
help
=
"
Infile contact
"
"
type
"
)
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docs/usage.rst
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