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Blaise LI
bioinfo_utils
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128af567
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128af567
authored
2 years ago
by
Blaise Li
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Still patching wildcards.
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small_RNA-seq/small_RNA-seq.snakefile
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128af567
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@@ -4344,6 +4344,9 @@ def source_fold_data(wildcards):
# 08/06/2023: Take into account new "_by_{norm}" file name element in RPM files
# possibly set wildcard constraints
elif fold_type in RPM_FOLD_TYPES:
assert wildcards.fold_type.startswith("mean_log2_RPM_by_")
assert wildcards.fold_type.endswith("_fold")
wildcards.norm = wildcards.fold_type[len("mean_log2_RPM_by_"):-len("_fold")]
if hasattr(wildcards, "contrast_type"):
# We want all contrasts of this type.
#https://stackoverflow.com/a/26791923/1878788
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