Missing update.

small_RNA-seq/small_RNA-seq.snakefile

@@ -196,6 +196,7 @@ from libworkflows import get_chrom_sizes, column_converter, make_id_list_getter
 from libworkflows import read_int_from_file, strip_split, file_len, last_lines, save_plot, SHELL_FUNCTIONS
 from libworkflows import filter_combinator, read_feature_counts, sum_by_family, sum_feature_counts, sum_htseq_counts, warn_context
 from smincludes import rules as irules
+from smwrappers import wrappers_dir
 strip = str.strip
 
 alignment_settings = {"bowtie2": "-L 6 -i S,1,0.8 -N 0"}
@@ -1012,7 +1013,7 @@ rule map_on_genome:
     resources:
         mem_mb=700
     wrapper:
-        "file:///pasteur/homes/bli/src/bioinfo_utils/snakemake_wrappers/map_on_genome"
+        f"file://{wrappers_dir}/map_on_genome"
 
 
 rule extract_nomap_siRNAs:
@@ -1065,7 +1066,7 @@ rule remap_on_genome:
     resources:
         mem_mb=700
     wrapper:
-        "file:///pasteur/homes/bli/src/bioinfo_utils/snakemake_wrappers/map_on_genome"
+        f"file://{wrappers_dir}/map_on_genome"
 
 
 def source_sam(wildcards):
@@ -1100,7 +1101,7 @@ rule sam2indexedbam:
     resources:
         mem_mb=4100
     wrapper:
-        "file:///pasteur/homes/bli/src/bioinfo_utils/snakemake_wrappers/sam2indexedbam"
+        f"file://{wrappers_dir}/sam2indexedbam"
 
 
 rule compute_coverage: