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Commit 313d0ce7 authored by Blaise Li's avatar Blaise Li
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Use main pybedtools.

parent 79f9780b
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bam25prime @ e196dc25
Subproject commit 19d78189de09096be40ec4fa8569bc087093a4d2
Subproject commit e196dc25c2725c932974444d76ee16097488dda0
libhts @ e2deadec
Subproject commit 2f362a38b407f980718b61ac36c26afd41441504
Subproject commit e2deadec42e7eb8a61d083c99cc6e7a7728de5e6
small_RNA-seq/requirements.txt
View file @ 313d0ce7
......@@ -15,7 +15,8 @@ libworkflows @ git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/
snakemake_wrappers @ git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.pasteur.fr/bli/snakemake_wrappers.git
rpy2
# extra dependencies for the sRNA-seq annotation script small_RNA_seq_annotate.py
pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
pybedtools
pysam
paraccumulators @ git+https://bioinfo_utils:EfTj-nvWDN84ZF_UzWPx@gitlab.pasteur.fr/bli/paraccumulators.git
# extra dependencies for some rules
......
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