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Blaise LI
bioinfo_utils
Commits
313d0ce7
Commit
313d0ce7
authored
Jan 22, 2020
by
Blaise Li
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Use main pybedtools.
parent
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Subproject commit 19
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libhts
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e2deadec
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e2deadec42e7eb8a61d083c99cc6e7a7728de5e6
small_RNA-seq/requirements.txt
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313d0ce7
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@@ -15,7 +15,8 @@ libworkflows @ git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/
snakemake_wrappers @ git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.pasteur.fr/bli/snakemake_wrappers.git
rpy2
# extra dependencies for the sRNA-seq annotation script small_RNA_seq_annotate.py
pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
pybedtools
pysam
paraccumulators @ git+https://bioinfo_utils:EfTj-nvWDN84ZF_UzWPx@gitlab.pasteur.fr/bli/paraccumulators.git
# extra dependencies for some rules
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