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Commit 3d73afb6 authored by Blaise Li's avatar Blaise Li
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Further fixing requirements.

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requirements.txt
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...@@ -2,8 +2,7 @@ alabaster==0.7.12 ...@@ -2,8 +2,7 @@ alabaster==0.7.12
appdirs==1.4.3 appdirs==1.4.3
attrs==19.3.0 attrs==19.3.0
Babel==2.8.0 Babel==2.8.0
# Editable install with no version control (bam25prime==0.1) git+https://bioinfo_utils:UTSWyWVPdw_kbxWR7-zD@gitlab.pasteur.fr/bli/bam25prime.git@b54d1ca837f41e1b8eaf1b7984d4799ca2cc50e4#egg=bam25prime==0.1
-e git+https://bioinfo_utils:UTSWyWVPdw_kbxWR7-zD@gitlab.pasteur.fr/bli/bam25prime.git@b54d1ca837f41e1b8eaf1b7984d4799ca2cc50e4#egg=bam25prime==0.1
beautifulsoup4==4.8.2 beautifulsoup4==4.8.2
bs4==0.0.1 bs4==0.0.1
certifi==2019.11.28 certifi==2019.11.28
...@@ -32,15 +31,11 @@ jsonschema==3.2.0 ...@@ -32,15 +31,11 @@ jsonschema==3.2.0
jupyter-core==4.6.1 jupyter-core==4.6.1
kiwisolver==1.1.0 kiwisolver==1.1.0
git+https://bioinfo_utils:izoZHUvhFJU8689hqM5u@gitlab.pasteur.fr/bli/libcelegans.git@36938bcfd6c1e4d1b51ec39d7706fb17e08a64d4#egg=libcelegans==0.1 git+https://bioinfo_utils:izoZHUvhFJU8689hqM5u@gitlab.pasteur.fr/bli/libcelegans.git@36938bcfd6c1e4d1b51ec39d7706fb17e08a64d4#egg=libcelegans==0.1
# Editable install with no version control (libdeseq==0.2) git+https://bioinfo_utils:uqiFbzWyBtzxYn7br82P@gitlab.pasteur.fr/bli/libdeseq.git@c4928c62ba6875dbe83e77caceb7265a7a81045d#egg=libdeseq==0.2
-e git+https://bioinfo_utils:uqiFbzWyBtzxYn7br82P@gitlab.pasteur.fr/bli/libdeseq.git@c4928c62ba6875dbe83e77caceb7265a7a81045d#egg=libdeseq==0.2 git+https://bioinfo_utils:DP-sqNot8AdsMek_KJiC@gitlab.pasteur.fr/bli/libhts.git@c4715fde8bf617a87906d9349432b2beb9462a43#egg=libhts==0.2
# Editable install with no version control (libhts==0.2) git+https://bioinfo_utils:aCyAV57zB-zzvux9Zhox@gitlab.pasteur.fr/bli/libreads.git@aed0b24fc888752a5f75832ad33ccc7c9251a4c6#egg=libreads==0.2
-e git+https://bioinfo_utils:DP-sqNot8AdsMek_KJiC@gitlab.pasteur.fr/bli/libhts.git@c4715fde8bf617a87906d9349432b2beb9462a43#egg=libhts==0.2 git+https://bioinfo_utils:FjgTxcUGPsGVQ-yZZVyS@gitlab.pasteur.fr/bli/libsmallrna.git@89178795d9dd148b1780a490b70c705b58a64b12#egg=libsmallrna==0.2
libreads==0.2 git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/bli/libworkflows.git@4b3859c4c852c518b18d809954b60d8ce00c5d15#egg=libworkflows==0.2
# Editable install with no version control (libsmallrna==0.2)
-e git+https://bioinfo_utils:FjgTxcUGPsGVQ-yZZVyS@gitlab.pasteur.fr/bli/libsmallrna.git@89178795d9dd148b1780a490b70c705b58a64b12#egg=libsmallrna==0.2
# Editable install with no version control (libworkflows==0.2)
-e git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/bli/libworkflows.git@4b3859c4c852c518b18d809954b60d8ce00c5d15#egg=libworkflows==0.2
mappy==2.17 mappy==2.17
MarkupSafe==1.1.1 MarkupSafe==1.1.1
matplotlib==3.1.2 matplotlib==3.1.2
...@@ -81,8 +76,7 @@ simplegeneric==0.8.1 ...@@ -81,8 +76,7 @@ simplegeneric==0.8.1
six==1.14.0 six==1.14.0
smmap2==2.0.5 smmap2==2.0.5
snakemake==5.10.0 snakemake==5.10.0
# Editable install with no version control (snakemake-wrappers==0.3) git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.pasteur.fr/bli/snakemake_wrappers.git@1e96ee88d41b9fdc7c15157d15041cbfe34fbc44#egg=snakemake-wrappers==0.3
-e git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.pasteur.fr/bli/snakemake_wrappers.git@1e96ee88d41b9fdc7c15157d15041cbfe34fbc44#egg=snakemake-wrappers==0.3
snowballstemmer==2.0.0 snowballstemmer==2.0.0
soupsieve==1.9.5 soupsieve==1.9.5
Sphinx==2.3.1 Sphinx==2.3.1
......
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