Add fwd and rev for sRNA-seq bigwig files.

small_RNA-seq/small_RNA-seq.snakefile

@@ -646,14 +646,14 @@ bigwig_files = [
             OPJ(mapping_dir, "{lib}_{rep}",
                 "{lib}_{rep}_{{read_type}}_on_%s_by_{{norm}}_{{orientation}}.bw" % genome),
             filtered_product, lib=LIBS, rep=REPS),
-        read_type=READ_TYPES_FOR_MAPPING, norm=SIZE_FACTORS, orientation=["all"]),
+        read_type=READ_TYPES_FOR_MAPPING, norm=SIZE_FACTORS, orientation=["fwd", "rev", "all"]),
     # means of replicates
     expand(
         expand(
             OPJ(mapping_dir, "{lib}_mean",
                 "{lib}_mean_{{read_type}}_on_%s_by_{{norm}}_{{orientation}}.bw" % genome),
             filtered_product, lib=LIBS),
-        read_type=READ_TYPES_FOR_MAPPING, norm=SIZE_FACTORS, orientation=["all"]),
+        read_type=READ_TYPES_FOR_MAPPING, norm=SIZE_FACTORS, orientation=["fwd", "rev", "all"]),
     ]
 
 meta_profiles = [