Add install rule in Makefile.

singularity/Makefile

+VERSION := $(shell git log | head -1 | cut -d " " -f2)
+
+ifeq ($(PREFIX),)
+	PREFIX := /opt/bioinfo_utils_$(VERSION)
+endif
+
+
+install: all
+	install -d $(PREFIX)/bin
+	install run_pipeline $(PREFIX)/bin/.
+	install run_pipeline.sh $(PREFIX)/bin/.
+	for datatype in sRNA-seq smallRNA-seq RNA-seq GRO-seq PRO-seq Degradome-seq Ribo-seq iCLIP-seq iCLIP; \
+	do \
+	    ln -s $(PREFIX)/bin/run_pipeline.sh $(PREFIX)/bin/run_$${datatype}_pipeline; \
+	done
+
 all: run_pipeline
 
 # Should depend on the rest of the repository.

singularity/README_singularity.md

@@ -28,7 +28,7 @@ Here are the aliases available for each pipeline:
     - `run_PRO-seq_pipeline`
 * RNA-seq
     - `run_RNA-seq_pipeline`
-* Degradme-seq
+* Degradome-seq
     - `run_Degradome-seq_pipeline`
 * Ribo-seq
     - `run_Ribo-seq_pipeline`