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Blaise LI
bioinfo_utils
Commits
9a0d87a3
Commit
9a0d87a3
authored
Nov 18, 2019
by
Blaise Li
Browse files
Add install rule in Makefile.
parent
cfdaca57
Changes
2
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Inline
Side-by-side
singularity/Makefile
View file @
9a0d87a3
VERSION
:=
$(
shell
git log |
head
-1
|
cut
-d
" "
-f2
)
ifeq
($(PREFIX),)
PREFIX
:=
/opt/bioinfo_utils_
$(VERSION)
endif
install
:
all
install
-d
$(PREFIX)
/bin
install
run_pipeline
$(PREFIX)
/bin/.
install
run_pipeline.sh
$(PREFIX)
/bin/.
for
datatype
in
sRNA-seq smallRNA-seq RNA-seq GRO-seq PRO-seq Degradome-seq Ribo-seq iCLIP-seq iCLIP
;
\
do
\
ln
-s
$(PREFIX)
/bin/run_pipeline.sh
$(PREFIX)
/bin/run_
$
${datatype}
_pipeline
;
\
done
all
:
run_pipeline
# Should depend on the rest of the repository.
...
...
singularity/README_singularity.md
View file @
9a0d87a3
...
...
@@ -28,7 +28,7 @@ Here are the aliases available for each pipeline:
-
`run_PRO-seq_pipeline`
*
RNA-seq
-
`run_RNA-seq_pipeline`
*
Degradme-seq
*
Degrad
o
me-seq
-
`run_Degradome-seq_pipeline`
*
Ribo-seq
-
`run_Ribo-seq_pipeline`
...
...
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