Added ressource used by snakemake wrapper.

CLIP/iCLIP.snakefile

@@ -469,6 +469,8 @@ rule sam2indexedbam:
         err = OPJ(log_dir, "{trimmer}", "sam2indexedbam", "{lib}_{rep}_{read_type}.err"),
     threads:
         4
+    resources:
+        mem_mb=4100
     wrapper:
         "file:///pasteur/homes/bli/src/bioinfo_utils/snakemake_wrappers/sam2indexedbam"
 

Degradome-seq/Degradome-seq.snakefile

@@ -144,7 +144,7 @@ rule trim_reads:
         trim3 = 4,
     shell:
         """
-        seqtk trimfq -b {params.trim3} {input.raw} | gzip > {output.trimmed} 
+        seqtk trimfq -b {params.trim3} {input.raw} | gzip > {output.trimmed}
         """
 
 
@@ -185,6 +185,8 @@ rule sam2indexedbam:
         err = OPJ(log_dir, "sam2indexedbam_{lib}_{rep}.err"),
     threads:
         8
+    resources:
+        mem_mb=4100
     wrapper:
         "file:///pasteur/homes/bli/src/bioinfo_utils/snakemake_wrappers/sam2indexedbam"
 

PRO-seq/PRO-seq.snakefile

@@ -506,6 +506,8 @@ rule sam2indexedbam:
         err = OPJ(log_dir, "{trimmer}", "sam2indexedbam", "{lib}_{rep}_{type}.err"),
     threads:
         4
+    resources:
+        mem_mb=4100
     wrapper:
         "file:///pasteur/homes/bli/src/bioinfo_utils/snakemake_wrappers/sam2indexedbam"
 

RNA_Seq_Cecere/RNA-seq.snakefile

@@ -653,6 +653,7 @@ rule sam2indexedbam:
         log = OPJ(log_dir, "sam2indexedbam_{lib}_{rep}_{mapped_type}.log"),
         err = OPJ(log_dir, "sam2indexedbam_{lib}_{rep}_{mapped_type}.err"),
     resources:
+        mem_mb=4100,
         io=45
     threads:
         8

Ribo-seq/Ribo-seq.snakefile

@@ -782,6 +782,8 @@ rule sam2indexedbam:
         err = OPJ(log_dir, "sam2indexedbam", "{lib}_{rep}_{read_type}.err"),
     threads:
         4
+    resources:
+        mem_mb=4100
     wrapper:
         "file:///pasteur/homes/bli/src/bioinfo_utils/snakemake_wrappers/sam2indexedbam"