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Commit b7b602de authored by Blaise Li's avatar Blaise Li
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Trying to improve container interface.

parent b416003f
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......@@ -33,5 +33,15 @@ From:workflows_base.sif
%runscript
cmd="${1}"
case ${cmd} in
"--version" | "-v")
exec cat /usr/local/share/doc/program_versions.txt
;;
"--help" | "-h")
exec echo "Usage: run_<seq_type>_pipeline <config.yaml> [<snakemake options> ...]"
;;
*)
shift
exec /usr/local/src/bioinfo_utils/${cmd} "$@"
;;
esac
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