Commit e95c85b9 authored by Blaise Li's avatar Blaise Li
Browse files

Configurable gene lists for PRO-seq.

parent a1725563
......@@ -164,6 +164,7 @@ DE_BIOTYPES = [biotype for biotype in LFC_RANGE.keys() if biotype in COUNT_BIOTY
#METAGENE_BIOTYPES = ["protein_coding"]
#METAGENE_BIOTYPES = ["protein_coding", "protein_coding_5UTR", "protein_coding_CDS", "protein_coding_3UTR"]
METAGENE_BIOTYPES = [biotype for biotype in ["protein_coding", "protein_coding_5UTR", "protein_coding_CDS", "protein_coding_3UTR"] if biotype in COUNT_BIOTYPES]
# default id lists for MA plots
ID_LISTS = [
"lfc_statuses",
"germline_specific",
......@@ -171,6 +172,7 @@ ID_LISTS = [
"spermatogenic_Ortiz_2014", "oogenic_Ortiz_2014",
"piRNA_dependent_prot_si_22G_down4_top200", "piRNA_dependent_prot_si_22G_down4",
"csr1_prot_si_supertargets_common"]
ID_LISTS = config.get("maplot_gene_lists", ID_LISTS)
aligner = config["aligner"]
########################
# Genome configuration #
......
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