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Made a nim version of fasq aware demultiplexer.
Time comparisons (in s) on iCLIP_CSR1_090118 data: | 50k | 1M | -------+-------+---------+ Python | 5.860 | 111.166 | Nim | 0.235 | 3.484 | -------+-------+---------+ The Nim version doesn't handle compressed data yet. Its call syntax is slightly different from the call syntax of the Python version, due to the use of docopt: barcodes have to be passed one by one with several -b options.
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- fastq-demultiplexing/Nim/install.sh 17 additions, 0 deletionsfastq-demultiplexing/Nim/install.sh
- fastq-demultiplexing/Nim/qaf_demux.nimble 13 additions, 0 deletionsfastq-demultiplexing/Nim/qaf_demux.nimble
- fastq-demultiplexing/Nim/src/qaf_demux.nim 202 additions, 0 deletionsfastq-demultiplexing/Nim/src/qaf_demux.nim
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