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Add pip freeze from singularity container.
requirements.txt
0 → 100644
alabaster==0.7.12 | |||
appdirs==1.4.3 | |||
attrs==19.3.0 | |||
Babel==2.8.0 | |||
# Editable install with no version control (bam25prime==0.1) | |||
-e /usr/local/lib/python3.7/site-packages | |||
beautifulsoup4==4.8.2 | |||
bs4==0.0.1 | |||
certifi==2019.11.28 | |||
cffi==1.13.2 | |||
chardet==3.0.4 | |||
ConfigArgParse==1.0 | |||
cycler==0.10.0 | |||
Cython==0.29.14 | |||
cytoolz==0.10.1 | |||
datrie==0.8 | |||
decorator==4.4.1 | |||
deepTools==3.3.2 | |||
deeptoolsintervals==0.1.9 | |||
docutils==0.16 | |||
gitdb2==2.0.6 | |||
GitPython==3.0.5 | |||
html5lib==1.0.1 | |||
husl==4.0.3 | |||
idna==2.8 | |||
imagesize==1.2.0 | |||
importlib-metadata==1.4.0 | |||
ipython-genutils==0.2.0 | |||
Jinja2==2.10.3 | |||
joblib==0.14.1 | |||
jsonschema==3.2.0 | |||
jupyter-core==4.6.1 | |||
kiwisolver==1.1.0 | |||
libcelegans==0.1 | |||
# Editable install with no version control (libdeseq==0.2) | |||
-e /usr/local/lib/python3.7/site-packages | |||
# Editable install with no version control (libhts==0.2) | |||
-e /usr/local/lib/python3.7/site-packages | |||
libreads==0.2 | |||
# Editable install with no version control (libsmallrna==0.2) | |||
-e /usr/local/lib/python3.7/site-packages | |||
# Editable install with no version control (libworkflows==0.2) | |||
-e /usr/local/lib/python3.7/site-packages | |||
mappy==2.17 | |||
MarkupSafe==1.1.1 | |||
matplotlib==3.1.2 | |||
more-itertools==8.1.0 | |||
nbformat==5.0.4 | |||
networkx==2.4 | |||
numpy==1.18.1 | |||
numpydoc==0.9.2 | |||
packaging==20.1 | |||
pandas==0.25.3 | |||
paraccumulators==0.1 | |||
plotly==4.5.0 | |||
pluggy==0.13.1 | |||
psutil==5.6.7 | |||
py==1.8.1 | |||
py2bit==0.3.0 | |||
pybedtools==0.8.0 | |||
pyBigWig==0.3.17 | |||
pybind11==2.4.3 | |||
pycparser==2.19 | |||
Pygments==2.5.2 | |||
pyparsing==2.4.6 | |||
pyrsistent==0.15.7 | |||
pysam==0.15.4 | |||
pytest==5.3.4 | |||
python-dateutil==2.8.1 | |||
pytz==2019.3 | |||
PyYAML==5.3 | |||
-e git+https://bioinfo_utils:KU13FfM3kLyeCrWpD2ZG@gitlab.pasteur.fr/bli/qaf_demux.git@bdf4b407bbf3f8be5149e49ac4cfcc05302ab1dc#egg=qaf_demux&subdirectory=../../qaf_demux/Python | |||
ratelimiter==1.2.0.post0 | |||
requests==2.22.0 | |||
retrying==1.3.3 | |||
rpy2==3.2.5 | |||
scikit-learn==0.22.1 | |||
scipy==1.4.1 | |||
seaborn==0.10.0 | |||
simplegeneric==0.8.1 | |||
six==1.14.0 | |||
smmap2==2.0.5 | |||
snakemake==5.10.0 | |||
# Editable install with no version control (snakemake-wrappers==0.3) | |||
-e /usr/local/lib/python3.7/site-packages | |||
snowballstemmer==2.0.0 | |||
soupsieve==1.9.5 | |||
Sphinx==2.3.1 | |||
sphinxcontrib-applehelp==1.0.1 | |||
sphinxcontrib-devhelp==1.0.1 | |||
sphinxcontrib-htmlhelp==1.0.2 | |||
sphinxcontrib-jsmath==1.0.1 | |||
sphinxcontrib-qthelp==1.0.2 | |||
sphinxcontrib-serializinghtml==1.1.3 | |||
toolz==0.10.0 | |||
toposort==1.5 | |||
traitlets==4.3.3 | |||
tzlocal==2.0.0 | |||
urllib3==1.25.8 | |||
wcwidth==0.1.8 | |||
webencodings==0.5.1 | |||
wrapt==1.11.2 | |||
zipp==2.1.0 |
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