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Started auto-methods in Ribo-seq pipeline.
The idea is to associate a methods file to certain rules in order to make it easier to write methods when publishing results. Rules can copy the methods files of upstream rules before appending their part.
... | ... | @@ -37,7 +37,7 @@ git+https://bioinfo_utils:izoZHUvhFJU8689hqM5u@gitlab.pasteur.fr/bli/libcelegans |
git+https://bioinfo_utils:uqiFbzWyBtzxYn7br82P@gitlab.pasteur.fr/bli/libdeseq.git@196ee3d15a125fad0d821256cc69f96c9129bf61#egg=libdeseq==0.2 | ||
git+https://bioinfo_utils:DP-sqNot8AdsMek_KJiC@gitlab.pasteur.fr/bli/libhts.git@3e835227ade102141c51449ddb7e71cc9459e96e#egg=libhts==0.3 | ||
git+https://bioinfo_utils:aCyAV57zB-zzvux9Zhox@gitlab.pasteur.fr/bli/libreads.git@aed0b24fc888752a5f75832ad33ccc7c9251a4c6#egg=libreads==0.2 | ||
git+https://bioinfo_utils:putYXvKZD8_vFkYkhgTw@gitlab.pasteur.fr/bli/libriboseq.git@95a0837ea703054a98f2f3b098818000828c6f8f#egg=libriboseq==0.1 | ||
git+https://bioinfo_utils:putYXvKZD8_vFkYkhgTw@gitlab.pasteur.fr/bli/libriboseq.git@2d4a9a6578b578ef492265cfaf3168fb6cdf67c8#egg=libriboseq==0.1 | ||
git+https://bioinfo_utils:FjgTxcUGPsGVQ-yZZVyS@gitlab.pasteur.fr/bli/libsmallrna.git@b44e5256fd5d42a63c8f0a6765e0d6af829d753d#egg=libsmallrna==0.2 | ||
git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/bli/libworkflows.git@1b3bec78cbc5cc15f307b3d761c534d35a1faf00#egg=libworkflows==0.3 | ||
mappy==2.17 | ||
... | ... | @@ -84,7 +84,7 @@ simplegeneric==0.8.1 |
six==1.14.0 | ||
smmap2==2.0.5 | ||
snakemake==5.19.3 | ||
git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.pasteur.fr/bli/snakemake_wrappers.git@ab4bdff451297b847369265e8a95b09de14e224b#egg=snakemake-wrappers==0.4 | ||
git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.pasteur.fr/bli/snakemake_wrappers.git@1ee7e494f42870122c79942b3a4c50ebf1dbea75#egg=snakemake-wrappers==0.4 | ||
snowballstemmer==2.0.0 | ||
soupsieve==1.9.5 | ||
Sphinx==2.3.1 | ||
... | ... |
snakemake_wrappers @ 1ee7e494
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