Commits · e73f02c949d59cb95005fab74fb5ba429ab5aa7f · Blaise LI / bioinfo_utils

Mar 09, 2017
- Reorganized files · b8522e1a
  Blaise Li authored 8 years ago
  
  b8522e1a
Mar 01, 2017
- Poly-U siRNA are now counted during annotation. · 2022241f
  Blaise Li authored 8 years ago
  2022241f
Feb 03, 2017
- Added read counting capability. · 518385aa
  Blaise Li authored 8 years ago
  
  518385aa
Feb 02, 2017
- Allow longer piRNA, separate pi and mi counting. · f62f4c8d
  Blaise Li authored 8 years ago
  
  f62f4c8d
Feb 01, 2017
- Simplified FuncApplier. · 9c9848ab
  Blaise Li authored 8 years ago
  
  9c9848ab
Jan 30, 2017
- Parallel version using Pool.imap_unordered. · 63cba4c2
  Blaise Li authored 8 years ago
  63cba4c2
Jan 25, 2017
- Use multiprocessing instead of accumulators. · 8104da1a
  Blaise Li authored 8 years ago
  8104da1a
Jan 24, 2017
- Cythonized more things (in libsmallrna). · 229b3b3e
  Blaise Li authored 8 years ago
  229b3b3e
Jan 23, 2017
- Cythonized things, stricter piRNA and miRNA def. · 23d27511
  Blaise Li authored 8 years ago
  23d27511
Jan 19, 2017
- Using sets for annotation types and annotations. · 6e41398b
  Blaise Li authored 8 years ago
  6e41398b
- Tried to do some optimizations. · 53ec9848
  Blaise Li authored 8 years ago
  53ec9848
Jan 13, 2017
- No longer using groupby to group annotations. · 1f20aaa5
  Blaise Li authored 8 years ago
  1f20aaa5
Jan 12, 2017
- Script to annotate bam file content. · 38138f54
  Blaise Li authored 8 years ago
  38138f54