-
- Downloads
Major update to run with snakemake 8.
Multi-allelic SNPs are included in the final output table, but the read counts for the ref alleles are not detailed. Only the total across alles is reported.
Showing
- README.md 26 additions, 3 deletionsREADME.md
- example_jointcall_config.yaml 18 additions, 18 deletionsexample_jointcall_config.yaml
- profile/slurm/CookieCutter.py 39 additions, 0 deletionsprofile/slurm/CookieCutter.py
- profile/slurm/config.yaml 29 additions, 0 deletionsprofile/slurm/config.yaml
- profile/slurm/settings.json 5 additions, 0 deletionsprofile/slurm/settings.json
- profile/slurm/slurm-jobscript.sh 3 additions, 0 deletionsprofile/slurm/slurm-jobscript.sh
- profile/slurm/slurm-sidecar.py 330 additions, 0 deletionsprofile/slurm/slurm-sidecar.py
- profile/slurm/slurm-status.py 106 additions, 0 deletionsprofile/slurm/slurm-status.py
- profile/slurm/slurm-submit.py 105 additions, 0 deletionsprofile/slurm/slurm-submit.py
- profile/slurm/slurm_utils.py 403 additions, 0 deletionsprofile/slurm/slurm_utils.py
- requirements.txt 5 additions, 0 deletionsrequirements.txt
- run_workflow.sh 25 additions, 24 deletionsrun_workflow.sh
- workflow/jointcall.snakefile 172 additions, 672 deletionsworkflow/jointcall.snakefile
- workflow/profile/config.yaml 41 additions, 0 deletionsworkflow/profile/config.yaml
Loading
Please register or sign in to comment