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Blaise LI
libhts
Commits
1e3695f8
Commit
1e3695f8
authored
5 years ago
by
Blaise Li
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Merge branch 'master' of gitlab.pasteur.fr:bli/libhts
parents
571fae24
2afd8597
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requirements.txt
+10
-0
10 additions, 0 deletions
requirements.txt
scripts/sam2indexedbam.sh
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scripts/sam2indexedbam.sh
setup.py
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setup.py
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requirements.txt
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0
View file @
1e3695f8
Cython
libworkflows
@
git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git
matplotlib
networkx
numpy
pandas
pyBigWig
pybedtools
@
git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers
--global-option
="cythonize"
scipy
seaborn
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scripts/sam2indexedbam.sh
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1e3695f8
...
...
@@ -31,6 +31,7 @@ function error_exit
samtools
--version
SAM
=
${
1
}
echo
"Will sort and index
${
SAM
}
"
case
${
SAM
}
in
*
.sam
)
...
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setup.py
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1
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1e3695f8
...
...
@@ -28,7 +28,7 @@ setup(
"
numpy
"
,
"
pandas
"
,
"
pyBigWig
"
,
"
pybedtools
"
,
"
pybedtools
@ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers
"
,
"
scipy
"
,
"
seaborn
"
],
# specific versions and index would rather belong to requirements.txt
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