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Commit 1e705417 authored by Blaise Li's avatar Blaise Li
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BamFile changed methods name.

parent 711099aa
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scripts/bed_bam2fq.py
View file @ 1e705417
......@@ -47,7 +47,7 @@ def main():
args = parser.parse_args()
bamfile = BamFile(args.bamfile)
for fastq in bamfile.bed_to_fastq(args.bedfile):
for fastq in bamfile.bedfile_to_fastq(args.bedfile):
print(fastq, end="")
return 0
......
setup.py
View file @ 1e705417
......@@ -38,7 +38,7 @@ setup(
"scripts/copypaste_bigwig_regions.py",
"scripts/extract_annot_start.py"],
install_requires=[
"libbamutils @ git+https://gitlab.pasteur.fr/bli/libbamutils.git@66879fb7e917dfa00e13da230310bb3b257766db",
"libbamutils @ git+https://gitlab.pasteur.fr/bli/libbamutils.git@a63cb65c3a078b6a5802a74df541da22bbc71c5c",
#"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git@744dd79b579577cb6e131653260d7990946be3ad#egg=libworkflows-0.1",
#"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git#egg=libworkflows-0.1",
#"libworkflows @ git+https://gitlab+deploy-token-31:isEzpsgbNf2sJMdUDy2g@gitlab.pasteur.fr/bli/libworkflows.git",
......
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