Commit 6666fe7b authored by Blaise Li's avatar Blaise Li

Back to custom pybedtools.

parent 3bf44740
#!/bin/sh
/usr/bin/env python3 setup.py build_ext
# .egg-link does not work with PYTHONPATH ?
# Install custom pybedtools first
/usr/bin/env python3 -m pip install -r requirements.txt
/usr/bin/env python3 -m pip install -e .
/usr/bin/env python3 -m pip install --no-deps --ignore-installed .
......@@ -5,7 +5,7 @@ networkx
numpy
pandas
pyBigWig
# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
pybedtools
pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
# pybedtools
scipy
seaborn
......@@ -28,8 +28,8 @@ setup(
"numpy",
"pandas",
"pyBigWig",
# "pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers",
"pybedtools",
"pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers",
# "pybedtools",
"scipy",
"seaborn"],
# specific versions and index would rather belong to requirements.txt
......
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