Skip to content
Snippets Groups Projects
Commit bc6758c1 authored by Blaise Li's avatar Blaise Li
Browse files

More robust bam2bigwig.sh, increment version.

parent 1843ade5
No related branches found
No related tags found
No related merge requests found
__version__ = 0.1
__version__ = 0.2
from .libhts import (
aligner2min_mapq,
gtf_2_genes_exon_lengths,
......
......@@ -50,6 +50,12 @@ bin_file=${2}
# | sed 's/SN://g' | sed 's/LN://' \
# | bedops --chop 10 - \
# > Caenorhabditis_elegans/Ensembl/WBcel235/Sequence/genome_binned_10.bed
# Ensure we use a 3 columns minimal bed for bin_file:
awk '{print $1"\t"$2"\t"$3}' ${bin_file} > "${workdir}/genome_binned.bed"
bin_file="${workdir}/genome_binned.bed"
lib_name=${3}
orient=${4}
# "F" is library type is normally stranded, "R" if it is reverse-stranded
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment