More robust bam2bigwig.sh, increment version.

libhts/__init__.py

-__version__ = 0.1
+__version__ = 0.2
 from .libhts import (
     aligner2min_mapq,
     gtf_2_genes_exon_lengths,

scripts/bam2bigwig.sh

@@ -50,6 +50,12 @@ bin_file=${2}
 #        | sed 's/SN://g' | sed 's/LN://' \
 #        | bedops --chop 10 - \
 #        > Caenorhabditis_elegans/Ensembl/WBcel235/Sequence/genome_binned_10.bed
+
+# Ensure we use a 3 columns minimal bed for bin_file:
+
+awk '{print $1"\t"$2"\t"$3}' ${bin_file} > "${workdir}/genome_binned.bed"
+bin_file="${workdir}/genome_binned.bed"
+
 lib_name=${3}
 orient=${4}
 # "F" is library type is normally stranded, "R" if it is reverse-stranded