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libhts
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Blaise LI
libhts
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460fe53f21b63986a791f776dd49623659dbd54c
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Created with Raphaël 2.2.0
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Option to consider features all-exonic.
master
master
Compatibility with workflows explicit dependency.
Relax requirements.
Version coherence with libbamutils.
Version coherence.
Preserving names when extracting genes from gtf.
Type error in libbamutils.
Further fix libbamutils.
Fix syntax error in libbamutils.
Update dependency for compatibility.
Update libbamutils dependency.
Extract bedtools version.
BamFile changed methods name.
Add option to filter according to strand.
Keep all bed by default in extract_annot_start.py
Script to extract reads from bam from bed regions.
Gene-list filtering in extract_annot_start.py.
Added script extracting first positions from bed.
No egg here.
Trying to avoid pseudo-conflicts with new pip.
Revert to using unofficial pybedtools.
Simpler dependencies.
Wrong variable name.
Catch stats numeric error.
Prepare adaptation to newer cluster.
Mention copypaste_bigwig_regions.py in README.
Avoid deprecation warning.
Update test for empty DataFrame.
Change dependency to scipy.
Constrain scipy version.
Nicer message.
Fixing message.
Adding progression messages.
Specify default "mode" argument for numpy.pad.
Add script to copy and paste bigwig regions.
Linting.
Make slurm-compatible script.
Further fixing test of existence.
Fix tests in bash.
Update used token.