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Commit 6438ba5a authored by Blaise Li's avatar Blaise Li
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tRFRNA naming issue.

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libsmallrna/libsmallrna.pyx
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...@@ -439,9 +439,9 @@ def count_small(annot_infos, write_queue): ...@@ -439,9 +439,9 @@ def count_small(annot_infos, write_queue):
map(str, annotations)), file=stderr) map(str, annotations)), file=stderr)
annot = find_matching_annot(annotations, seq) annot = find_matching_annot(annotations, seq)
# exit(1) # exit(1)
write_queue.put(("tRF", fastq)) write_queue.put(("tRFRNA", fastq))
counters["tRF"][annot[4]] += 1 counters["tRF"][annot[4]] += 1
counters["tRF"]["tRF"] += 1 counters["tRF"]["tRFRNA"] += 1
else: else:
# Consider a "general" all_si # Consider a "general" all_si
write_queue.put(("all_siRNA", fastq)) write_queue.put(("all_siRNA", fastq))
......
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