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Blaise LI
libworkflows
Commits
a6a8d82c
Commit
a6a8d82c
authored
5 years ago
by
Blaise Li
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Increase memory limit for some commands.
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3230409c
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libworkflows/libworkflows.py
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a6a8d82c
...
@@ -54,12 +54,12 @@ count_fastq_reads()
...
@@ -54,12 +54,12 @@ count_fastq_reads()
sort_by_seq()
sort_by_seq()
{{
{{
niceload --mem
5
00M fastq-sort -s || error_exit
"
fastq-sort failed
"
niceload --mem
100
00M fastq-sort -s || error_exit
"
fastq-sort failed
"
}}
}}
dedup()
dedup()
{{
{{
sort_by_seq | niceload --mem
5
00M remove-duplicates-from-sorted-fastq
\\
sort_by_seq | niceload --mem
100
00M remove-duplicates-from-sorted-fastq
\\
|| error_exit
"
remove_duplicates_from_sorted_fastq failed
"
|| error_exit
"
remove_duplicates_from_sorted_fastq failed
"
}}
}}
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