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Blaise LI
plotting_scripts
Commits
1e68e86d
Commit
1e68e86d
authored
Sep 08, 2020
by
Blaise Li
Browse files
Made a Python package.
parent
8d61fa1c
Changes
5
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COPYING
→
COPYING
.txt
View file @
1e68e86d
File moved
install.sh
0 → 100755
View file @
1e68e86d
#!/bin/sh
# /usr/bin/env python3 setup.py build_ext
# .egg-link does not work with PYTHONPATH ?
# Install custom pybedtools first
/usr/bin/env python3
-m
pip
install
-r
requirements.txt
/usr/bin/env python3
-m
pip
install
-e
.
/usr/bin/env python3
-m
pip
install
--no-deps
--ignore-installed
.
create_metagene_profile.py
→
scripts/
create_metagene_profile.py
View file @
1e68e86d
File moved
plot_scatterplot.py
→
scripts/
plot_scatterplot.py
View file @
1e68e86d
File moved
setup.py
0 → 100644
View file @
1e68e86d
# Copyright (C) 2020 Blaise Li
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
from
setuptools
import
setup
,
find_packages
#from Cython.Build import cythonize
name
=
"plotting_scripts"
__version__
=
"0.1"
setup
(
name
=
name
,
version
=
__version__
,
description
=
"Some scripts used in Germano Cecere's laboratory at Institut Pasteur."
,
author
=
"Blaise Li"
,
author_email
=
"blaise.li@normalesup.org"
,
license
=
"GNU GPLv3"
,
packages
=
find_packages
(),
scripts
=
[
"scripts/create_metagene_profile.py"
,
"scripts/plot_scatterplot.py"
],
install_requires
=
[
"cytoolz"
,
"deeptools"
,
"gffutils"
,
"libhts @ git+https://bioinfo_utils:DP-sqNot8AdsMek_KJiC@gitlab.pasteur.fr/bli/libhts.git"
,
"libworkflows @ git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/bli/libworkflows.git"
,
"matplotlib"
,
"pandas"
],
)
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