Commit 1e68e86d authored by Blaise Li's avatar Blaise Li
Browse files

Made a Python package.

parent 8d61fa1c
#!/bin/sh
# /usr/bin/env python3 setup.py build_ext
# .egg-link does not work with PYTHONPATH ?
# Install custom pybedtools first
/usr/bin/env python3 -m pip install -r requirements.txt
/usr/bin/env python3 -m pip install -e .
/usr/bin/env python3 -m pip install --no-deps --ignore-installed .
# Copyright (C) 2020 Blaise Li
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
from setuptools import setup, find_packages
#from Cython.Build import cythonize
name = "plotting_scripts"
__version__ = "0.1"
setup(
name=name,
version=__version__,
description="Some scripts used in Germano Cecere's laboratory at Institut Pasteur.",
author="Blaise Li",
author_email="blaise.li@normalesup.org",
license="GNU GPLv3",
packages=find_packages(),
scripts=[
"scripts/create_metagene_profile.py",
"scripts/plot_scatterplot.py"],
install_requires=[
"cytoolz",
"deeptools",
"gffutils",
"libhts @ git+https://bioinfo_utils:DP-sqNot8AdsMek_KJiC@gitlab.pasteur.fr/bli/libhts.git",
"libworkflows @ git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/bli/libworkflows.git",
"matplotlib",
"pandas"],
)
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