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Blaise LI
qaf_demux
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cdfbbd5b
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cdfbbd5b
authored
6 years ago
by
Blaise LI
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Update README.md
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...
...
@@ -11,13 +11,13 @@ A similar (but more sophisticated) approach is available here:
There are currently two versions of this program, with slightly
different calling syntax:
different calling syntax
es
:
*
A Python version, residing in
`./Python`
, and called using
`qaf-demux`
(with
a dash)
a dash)
.
*
A Nim version, residing in
`./Nim`
, and called using
`qaf_demux`
(with an
underscore)
underscore)
.
The Nim version should be faster than the Python version.
...
...
@@ -45,8 +45,8 @@ cd Python
pip3 install .
```
Note: The
`Python/install.sh`
script is what I personnally use to insall
it. It
uses the
`-e`
option of pip that avoids having to reinstall after editing the
Note: The
`Python/install.sh`
script is what I personnally use to ins
t
all
the program.
It
uses the
`-e`
option of pip that avoids having to reinstall after editing the
source (which, by the way, is in
`./Python/bin/qaf-demux`
). You can use this if
you want to modify the script to better suit your needs.
...
...
@@ -57,7 +57,7 @@ Nim version
If you haven't already done it, you first need to
[
install
Nim
](
https://nim-lang.org/install_unix.html
)
.
Then you can install
i
t locally (in your
`~/.nimble/bin`
directory) using
`nimble`
:
Then you can install t
he program
locally (in your
`~/.nimble/bin`
directory) using
`nimble`
:
```
cd Nim
...
...
@@ -189,6 +189,6 @@ You can pass the data to the program's standard input instead of using the `-i`
The output directory must exist before you run the program.
Use as many
`-b`
options as there are barcode.
Use as many
`-b`
options as there are barcode
s
.
Don't forget the
`-g`
option if the data is gzipped.
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