Skip to content
Snippets Groups Projects
Commit cdfbbd5b authored by Blaise  LI's avatar Blaise LI
Browse files

Update README.md

parent 46fb6170
No related branches found
No related tags found
No related merge requests found
......@@ -11,13 +11,13 @@ A similar (but more sophisticated) approach is available here:
There are currently two versions of this program, with slightly
different calling syntax:
different calling syntaxes:
* A Python version, residing in `./Python`, and called using `qaf-demux` (with
a dash)
a dash).
* A Nim version, residing in `./Nim`, and called using `qaf_demux` (with an
underscore)
underscore).
The Nim version should be faster than the Python version.
......@@ -45,8 +45,8 @@ cd Python
pip3 install .
```
Note: The `Python/install.sh` script is what I personnally use to insall it. It
uses the `-e` option of pip that avoids having to reinstall after editing the
Note: The `Python/install.sh` script is what I personnally use to install the program.
It uses the `-e` option of pip that avoids having to reinstall after editing the
source (which, by the way, is in `./Python/bin/qaf-demux`). You can use this if
you want to modify the script to better suit your needs.
......@@ -57,7 +57,7 @@ Nim version
If you haven't already done it, you first need to [install
Nim](https://nim-lang.org/install_unix.html).
Then you can install it locally (in your `~/.nimble/bin` directory) using `nimble`:
Then you can install the program locally (in your `~/.nimble/bin` directory) using `nimble`:
```
cd Nim
......@@ -189,6 +189,6 @@ You can pass the data to the program's standard input instead of using the `-i`
The output directory must exist before you run the program.
Use as many `-b` options as there are barcode.
Use as many `-b` options as there are barcodes.
Don't forget the `-g` option if the data is gzipped.
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment