methods=f"# {snakemake.rule}\nThe first {}{snakemake.params.read_name} reads were mapped on the {snakemake.params.genome_name} using {snakemake.params.aligner} (version ${{{{v}}}}) with options {snakemake.params.settings}."
methods=f"# {snakemake.rule}\nThe first 10000{snakemake.params.read_name} reads were mapped on the {snakemake.params.genome_name} using {snakemake.params.aligner} (version ${{{{v}}}}) with options {snakemake.params.settings}. Among those settings, the one resulting in the highest mapping rate was retained."
shell(f"""
shell(f"""
v=$({snakemake.params.aligner} --version | head -1 | awk '{{{{print $3}}}}')
v=$({snakemake.params.aligner} --version | head -1 | awk '{{{{print $3}}}}')